Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ82_RS14370 Genome accession   NZ_CP091511
Coordinates   2849631..2850434 (-) Length   267 a.a.
NCBI ID   WP_058357673.1    Uniprot ID   -
Organism   Vitreoscilla massiliensis strain SN4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2844631..2855434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ82_RS14340 (LVJ82_14340) - 2844977..2845696 (+) 720 WP_058357679.1 methyltransferase domain-containing protein -
  LVJ82_RS14345 (LVJ82_14345) rnhA 2845696..2846145 (+) 450 WP_058357678.1 ribonuclease HI -
  LVJ82_RS14350 (LVJ82_14350) - 2846260..2847011 (+) 752 WP_108721493.1 IS5 family transposase -
  LVJ82_RS14355 (LVJ82_14355) radC 2847034..2847696 (+) 663 WP_058357677.1 DNA repair protein RadC -
  LVJ82_RS14360 (LVJ82_14360) - 2847807..2848514 (-) 708 WP_058357676.1 hypothetical protein -
  LVJ82_RS14365 (LVJ82_14365) - 2848846..2849268 (-) 423 WP_058357674.1 hypothetical protein -
  LVJ82_RS14370 (LVJ82_14370) comL 2849631..2850434 (-) 804 WP_058357673.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ82_RS14375 (LVJ82_14375) rluD 2850443..2851546 (+) 1104 WP_058357672.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ82_RS14380 (LVJ82_14380) pgeF 2851568..2852320 (+) 753 WP_058357671.1 peptidoglycan editing factor PgeF -
  LVJ82_RS14385 (LVJ82_14385) - 2852397..2854691 (+) 2295 WP_058357670.1 DNA internalization-related competence protein ComEC/Rec2 -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30750.52 Da        Isoelectric Point: 8.6647

>NTDB_id=651898 LVJ82_RS14370 WP_058357673.1 2849631..2850434(-) (comL) [Vitreoscilla massiliensis strain SN4]
MKKILIASCVVLALTGCANKGTSVDKDAQITQSWSVQQLYTSAQDELNGKNYERAVKLYDILQSRYPNGRYAQQAQLDKA
YAYYRDAEPDKAMAVLDNFEKKYPKHENLDYVFYLRGLIAFNEDTSFVNKLASQDWADRDQKANREAYGYFNTLVTRWPD
SKYAADASERMSKLVVAFAGNEMAIARYYLKRGAYVAAVNRAQNVVQHYQNTPFTEEALAIMSTSYAKLGQTQLSQDTQR
VLQTNFPESKYAEGWKADDIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=651898 LVJ82_RS14370 WP_058357673.1 2849631..2850434(-) (comL) [Vitreoscilla massiliensis strain SN4]
ATGAAAAAAATTTTAATTGCCAGCTGTGTGGTTCTTGCTTTAACAGGCTGTGCCAATAAAGGCACATCGGTTGATAAAGA
TGCTCAAATCACGCAATCTTGGTCGGTACAACAGTTGTATACCTCGGCTCAAGATGAGTTAAATGGCAAAAACTACGAAC
GTGCAGTCAAATTATACGATATTTTGCAGTCGCGTTACCCAAATGGTCGTTATGCACAGCAGGCTCAATTGGATAAAGCA
TACGCCTATTACCGCGATGCCGAGCCAGATAAGGCCATGGCGGTATTGGATAATTTTGAAAAAAAATACCCAAAACATGA
GAATTTGGACTATGTGTTTTATTTGCGCGGCTTGATTGCATTTAATGAAGACACATCGTTTGTGAACAAATTGGCCTCAC
AAGACTGGGCCGACCGCGATCAAAAAGCCAACCGCGAAGCCTATGGTTACTTCAATACCTTGGTGACCCGTTGGCCAGAC
AGCAAATACGCTGCCGACGCCTCTGAACGCATGAGCAAATTGGTGGTAGCCTTTGCCGGTAATGAAATGGCGATTGCGCG
TTATTACCTCAAGCGCGGCGCGTATGTGGCAGCGGTAAACCGCGCGCAAAACGTGGTTCAACACTACCAAAACACGCCGT
TCACCGAAGAAGCGTTGGCGATTATGTCTACGTCTTATGCTAAATTAGGTCAAACCCAGTTAAGCCAAGACACACAACGC
GTGTTGCAAACCAACTTCCCAGAAAGCAAATACGCCGAAGGTTGGAAAGCCGACGACATCCCATGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(36-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

62.921

100

0.629
  comL Neisseria gonorrhoeae MS11

61.798

100

0.618