Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVJ86_RS03780 Genome accession   NZ_CP091510
Coordinates   849828..851210 (+) Length   460 a.a.
NCBI ID   WP_047760639.1    Uniprot ID   A0A0J0YTG9
Organism   Neisseria arctica strain KH1503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 844828..856210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS03745 (LVJ86_03745) dnaB 844859..846268 (+) 1410 WP_047760592.1 replicative DNA helicase -
  LVJ86_RS03750 (LVJ86_03750) - 846426..847079 (+) 654 WP_047760591.1 GspH/FimT family pseudopilin -
  LVJ86_RS03755 (LVJ86_03755) pilV 847085..847549 (+) 465 Protein_727 type IV pilus modification protein PilV -
  LVJ86_RS03760 (LVJ86_03760) - 847618..848667 (+) 1050 WP_053008310.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LVJ86_RS03765 (LVJ86_03765) pilK 848649..849215 (+) 567 WP_047760590.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LVJ86_RS03775 (LVJ86_03775) - 849230..849667 (+) 438 WP_047760589.1 PilX family type IV pilin -
  LVJ86_RS03780 (LVJ86_03780) radA 849828..851210 (+) 1383 WP_047760639.1 DNA repair protein RadA Machinery gene
  LVJ86_RS03785 (LVJ86_03785) - 851655..853007 (-) 1353 WP_047760588.1 DEAD/DEAH box helicase -
  LVJ86_RS03790 (LVJ86_03790) - 853067..853231 (+) 165 WP_161796048.1 hypothetical protein -
  LVJ86_RS03795 (LVJ86_03795) - 853318..854262 (+) 945 WP_047760587.1 class I SAM-dependent methyltransferase -
  LVJ86_RS03800 (LVJ86_03800) - 854286..854501 (+) 216 WP_047760586.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49615.24 Da        Isoelectric Point: 7.1020

>NTDB_id=651859 LVJ86_RS03780 WP_047760639.1 849828..851210(+) (radA) [Neisseria arctica strain KH1503]
MAKAPKTIYQCSECGGTTPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADVSQVQELSKVTATEVPRCATGMGELD
RVLGGGLVEGAVILLGGDPGIGKSTLLLQTVALMAKNRKVLYVSGEESAQQVALRSQRFGLQSDGVNLLAEIRMEAIQAA
LKQHEPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGISMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKINEPAADLAIILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKKAIVPKANLPRDMREFPNLQIFGVSSLQEAVEICRHAADS

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=651859 LVJ86_RS03780 WP_047760639.1 849828..851210(+) (radA) [Neisseria arctica strain KH1503]
ATGGCAAAAGCACCGAAAACAATTTATCAATGCAGCGAATGTGGCGGTACAACTCCAAAGTGGCAAGGAAAATGCCCGCA
TTGCGGTGAGTGGAATACGTTACAGGAAAGTTTGGCAGCGCCTGAGCCGAAAAATGCCCGTTTTCAGTCTTGGGCGGCAG
ATGTATCTCAAGTACAGGAGCTGTCGAAAGTAACGGCAACAGAAGTGCCCCGTTGCGCAACAGGTATGGGCGAGTTGGAC
CGTGTATTGGGAGGAGGTTTAGTTGAAGGTGCGGTGATTTTATTGGGAGGTGATCCGGGTATCGGTAAATCAACCTTGTT
ATTGCAAACAGTTGCTCTGATGGCCAAAAACCGAAAAGTTTTGTATGTGTCCGGCGAGGAATCGGCACAACAAGTGGCTT
TGCGCTCCCAACGTTTTGGTTTGCAGAGTGATGGTGTAAACCTTTTGGCTGAAATCCGTATGGAAGCGATTCAGGCGGCT
TTGAAGCAGCATGAACCTGCGGTTGTGGTGATTGATTCGATTCAAACCATGTATTCCGATCAGATTACTTCTGCACCTGG
CTCGGTTTCCCAAGTACGTGAGTGTGCGGCACAGCTGACGCGTATGGCGAAACAAATGGGGATCAGTATGATTTTGGTCG
GCCATGTAACCAAAGATGGAGCAATCGCAGGCCCGCGTGTGTTGGAGCATATGGTCGATACCGTGTTGTATTTTGAAGGG
GATCAGCATTCCAATTACCGCATGATACGTGCGATTAAAAACCGTTTTGGCGCGGCCAATGAATTGGGTGTATTTGCGAT
GACTGAAACAGGCTTAAAAGGTGTTTCCAATCCATCGGCGATTTTTTTGGCGAGCTATCGTGACGATGTGCCCGGTTCAT
GCGTATTGGTTACTCAAGAGGGTAGTCGTCCGTTGTTGGTAGAAATTCAGGCATTGGTAGATGATGCGCACGGTTTTACT
CCCAAGCGCTTGACGGTTGGATTAGAGCAAAACCGTTTGGCGATGTTATTGGCGGTATTAAATCGCCATGCAGGGATTGC
ATGCTTTGATCAAGACGTATTTTTAAATGCGGTAGGTGGTGTCAAGATTAACGAACCTGCTGCGGATTTGGCGATTATTT
TGGCTATGCTTTCCAGCTTTCGAAACCGTCCTCTGCCTGAGAAAATGGTGGCTTTCGGTGAAATCGGTTTGAGCGGCGAG
GTGCGTCCGGTCGCACGCGGGCAAGAGCGTTTGAAAGAGGCGGAAAAATTGGGTTTTAAAAAGGCTATTGTGCCTAAGGC
TAATTTACCGCGTGATATGCGGGAGTTTCCGAATTTACAGATTTTTGGTGTGAGCAGTTTACAAGAAGCGGTAGAAATTT
GCCGCCATGCCGCAGATTCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(75-220)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YTG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.13

0.496
  radA Streptococcus pneumoniae Rx1

46.608

99.348

0.463
  radA Streptococcus pneumoniae D39

46.608

99.348

0.463
  radA Streptococcus pneumoniae R6

46.608

99.348

0.463
  radA Streptococcus pneumoniae TIGR4

46.608

99.348

0.463
  radA Streptococcus mitis SK321

46.903

98.261

0.461
  radA Streptococcus mitis NCTC 12261

46.389

99.348

0.461