Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   LVJ86_RS03765 Genome accession   NZ_CP091510
Coordinates   848649..849215 (+) Length   188 a.a.
NCBI ID   WP_047760590.1    Uniprot ID   A0A0J0YTB7
Organism   Neisseria arctica strain KH1503     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 843649..854215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS03740 (LVJ86_03740) - 844094..844675 (-) 582 WP_047760593.1 superoxide dismutase -
  LVJ86_RS03745 (LVJ86_03745) dnaB 844859..846268 (+) 1410 WP_047760592.1 replicative DNA helicase -
  LVJ86_RS03750 (LVJ86_03750) - 846426..847079 (+) 654 WP_047760591.1 GspH/FimT family pseudopilin -
  LVJ86_RS03755 (LVJ86_03755) pilV 847085..847549 (+) 465 Protein_727 type IV pilus modification protein PilV -
  LVJ86_RS03760 (LVJ86_03760) - 847618..848667 (+) 1050 WP_053008310.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LVJ86_RS03765 (LVJ86_03765) pilK 848649..849215 (+) 567 WP_047760590.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LVJ86_RS03775 (LVJ86_03775) - 849230..849667 (+) 438 WP_047760589.1 PilX family type IV pilin -
  LVJ86_RS03780 (LVJ86_03780) radA 849828..851210 (+) 1383 WP_047760639.1 DNA repair protein RadA Machinery gene
  LVJ86_RS03785 (LVJ86_03785) - 851655..853007 (-) 1353 WP_047760588.1 DEAD/DEAH box helicase -
  LVJ86_RS03790 (LVJ86_03790) - 853067..853231 (+) 165 WP_161796048.1 hypothetical protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20008.64 Da        Isoelectric Point: 6.9026

>NTDB_id=651858 LVJ86_RS03765 WP_047760590.1 848649..849215(+) (pilK) [Neisseria arctica strain KH1503]
MRRQYLSNMPPVKQQGFALFIVLIMMIVVAVLVVAAAQSYNTEMRISSNDADRKLAMSVAEAALRQGESEIADLEDPSFT
ADCTDGLCSPANAQAATVSGTRQGTVNLAAGGTVPVWQPKSCGEDTCLESKGKTYGATGSGVSKAARYVIEFISHQNNVT
VYRVTARAWGKNANTMVTVQSYVESSGN

Nucleotide


Download         Length: 567 bp        

>NTDB_id=651858 LVJ86_RS03765 WP_047760590.1 848649..849215(+) (pilK) [Neisseria arctica strain KH1503]
ATGCGAAGACAATATTTAAGCAATATGCCGCCGGTTAAGCAGCAGGGCTTTGCTTTGTTTATCGTTCTGATTATGATGAT
TGTAGTGGCCGTATTGGTTGTGGCTGCAGCCCAATCCTACAATACGGAAATGAGGATCAGCTCAAATGATGCCGATCGCA
AGTTGGCGATGTCGGTTGCAGAAGCCGCCCTACGGCAAGGAGAGAGTGAAATTGCAGATTTGGAGGATCCTAGTTTTACT
GCTGATTGCACAGATGGCTTATGCTCTCCTGCAAATGCGCAAGCTGCAACAGTTAGCGGCACCCGTCAAGGCACGGTTAA
TTTGGCTGCAGGCGGTACTGTTCCAGTTTGGCAGCCTAAATCATGTGGTGAAGATACTTGCTTGGAAAGCAAAGGTAAAA
CGTATGGGGCAACCGGTAGCGGTGTCAGTAAGGCGGCACGTTATGTGATTGAGTTTATCAGTCATCAAAATAATGTTACG
GTTTATCGTGTAACAGCCCGTGCTTGGGGTAAAAATGCCAATACTATGGTAACGGTACAATCTTATGTTGAATCATCGGG
TAATTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(85-183)

PilX N-terminal (PilX_N)

(15-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YTB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

46.97

100

0.495