Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ86_RS02130 Genome accession   NZ_CP091510
Coordinates   484237..485040 (-) Length   267 a.a.
NCBI ID   WP_047760744.1    Uniprot ID   A0A0J0YSW9
Organism   Neisseria arctica strain KH1503     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479237..490040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS02110 (LVJ86_02110) - 480412..481845 (+) 1434 WP_047760746.1 efflux transporter outer membrane subunit -
  LVJ86_RS02115 (LVJ86_02115) rpmB 482210..482443 (+) 234 WP_002216391.1 50S ribosomal protein L28 -
  LVJ86_RS02120 (LVJ86_02120) rpmG 482470..482625 (+) 156 WP_003684373.1 50S ribosomal protein L33 -
  LVJ86_RS02125 (LVJ86_02125) ubiM 482856..484040 (-) 1185 WP_047760745.1 5-demethoxyubiquinol-8 5-hydroxylase UbiM -
  LVJ86_RS02130 (LVJ86_02130) comL 484237..485040 (-) 804 WP_047760744.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ86_RS02135 (LVJ86_02135) rluD 485039..486160 (+) 1122 WP_047760743.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ86_RS02140 (LVJ86_02140) pgeF 486295..487071 (+) 777 WP_047760742.1 peptidoglycan editing factor PgeF -
  LVJ86_RS02145 (LVJ86_02145) brnQ 487253..488584 (+) 1332 WP_075968081.1 branched-chain amino acid transport system II carrier protein -
  LVJ86_RS02150 (LVJ86_02150) - 488830..489240 (-) 411 WP_047760741.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31054.02 Da        Isoelectric Point: 7.9452

>NTDB_id=651852 LVJ86_RS02130 WP_047760744.1 484237..485040(-) (comL) [Neisseria arctica strain KH1503]
MKKILLVVTLGLALGGCAATGTVDKDAQMTQDWTVERLYTEAQDDLNSNNYTRAIKLYEILESRFPNGRHAQQAQLDTAY
AYYKDDEPEKALAAVERFQRMYPQHPNMDYALYLKGLILFNEDQSFLNKLASQDWSDRDPKANRDAYHAFAQLIERYPNS
RYAQDATERMTKLVDALGGNEIAVARYYMKRGAYLAAANRAQKVVQQYQNTRFVEEALAIMEQAYQRLNKPQLADDTRRI
LSQNFPNSPYLQTGWKLDSMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=651852 LVJ86_RS02130 WP_047760744.1 484237..485040(-) (comL) [Neisseria arctica strain KH1503]
ATGAAAAAAATTCTTTTAGTAGTAACTCTAGGCTTGGCATTGGGCGGCTGTGCCGCTACCGGCACCGTAGATAAAGATGC
CCAAATGACCCAAGATTGGACAGTAGAACGTCTTTACACCGAGGCGCAAGACGACTTAAACAGCAACAATTATACTAGAG
CCATCAAGTTATACGAAATTTTAGAATCGCGCTTCCCTAATGGCCGCCATGCGCAACAAGCGCAGCTTGACACCGCATAT
GCCTACTATAAAGATGACGAACCTGAAAAAGCCCTCGCCGCAGTTGAGCGTTTCCAGCGTATGTACCCCCAACATCCGAA
TATGGATTACGCCCTTTATTTAAAAGGCCTCATCCTCTTCAATGAAGATCAGTCTTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCTGACCGAGATCCAAAAGCAAACCGCGATGCTTATCATGCTTTTGCGCAATTAATCGAACGCTATCCCAACAGT
CGCTACGCACAAGATGCCACCGAACGCATGACCAAGCTGGTAGATGCCTTGGGAGGTAATGAAATTGCGGTAGCCCGCTA
TTACATGAAACGCGGAGCCTATTTGGCGGCTGCAAACCGTGCGCAAAAAGTGGTTCAGCAGTATCAAAACACACGTTTTG
TAGAAGAGGCTCTAGCCATCATGGAGCAAGCCTATCAACGGTTAAACAAACCCCAATTGGCAGACGATACCCGCCGTATT
TTGTCGCAAAACTTCCCCAACAGCCCCTATCTGCAAACCGGATGGAAATTGGATAGCATGCCTTGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YSW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

76.692

99.625

0.764
  comL Neisseria gonorrhoeae MS11

76.316

99.625

0.76