Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ88_RS06845 Genome accession   NZ_CP091509
Coordinates   1515197..1516003 (+) Length   268 a.a.
NCBI ID   WP_054598829.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1510197..1521003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS06835 (LVJ88_06835) rbbA 1511222..1514008 (+) 2787 WP_085418821.1 ribosome-associated ATPase/putative transporter RbbA -
  LVJ88_RS06840 (LVJ88_06840) rluD 1514077..1515198 (-) 1122 WP_054598830.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ88_RS06845 (LVJ88_06845) comL 1515197..1516003 (+) 807 WP_054598829.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ88_RS06850 (LVJ88_06850) - 1516247..1516498 (+) 252 WP_085358990.1 hypothetical protein -
  LVJ88_RS06855 (LVJ88_06855) - 1516595..1517737 (-) 1143 WP_085418822.1 NADH-dependent flavin oxidoreductase -
  LVJ88_RS06860 (LVJ88_06860) - 1517992..1518657 (-) 666 WP_085418823.1 glutathione S-transferase -
  LVJ88_RS06865 (LVJ88_06865) - 1518705..1519058 (-) 354 WP_085418824.1 DUF4298 domain-containing protein -
  LVJ88_RS06870 (LVJ88_06870) - 1519127..1520098 (-) 972 WP_085418825.1 HlyD family efflux transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31007.01 Da        Isoelectric Point: 8.9097

>NTDB_id=651822 LVJ88_RS06845 WP_054598829.1 1515197..1516003(+) (comL) [Neisseria dumasiana strain LMG 30012]
MKKILLVISLGLALSGCAGTKGTIDKDAQITQEWTVEKLYAEAHDELNSSNYTRAVKLYEILESRFPNGRHAQQAQLDTA
YAYYKDDEPEKALAAIERFQRNHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYHAFAQLIERYPN
SKYAADASERMAKLVDALGGNEIAVARYYMKRGAYLAAVNRAQKIVERYQNTRFVEEALAIMEASYRKMEKPRLADDTRR
ILAQNFPNSPYLTKSWSDSNIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=651822 LVJ88_RS06845 WP_054598829.1 1515197..1516003(+) (comL) [Neisseria dumasiana strain LMG 30012]
ATGAAAAAAATTCTTTTAGTTATTTCATTGGGTTTGGCCTTGAGCGGCTGCGCCGGCACCAAAGGCACGATTGATAAAGA
CGCGCAAATCACTCAGGAATGGACGGTAGAAAAACTGTATGCTGAGGCTCACGACGAGTTAAACAGCAGCAATTATACGC
GAGCCGTTAAGTTATACGAAATTTTGGAATCCCGCTTCCCCAACGGCCGTCATGCCCAGCAGGCTCAGCTTGATACGGCT
TATGCCTACTATAAAGACGACGAGCCTGAAAAAGCGCTGGCCGCCATCGAACGCTTCCAACGCAACCATCCCCAGCATCC
CAATATGGACTATGCCTTATATCTCAAAGGCTTGGTACTGTTTAACGAAGATCAGTCGTTTTTAAACAAACTGGCTTCGC
AAGACTGGTCAGACCGCGATCCCAAAGCCAACCGCGACGCCTATCACGCTTTTGCCCAATTGATCGAACGCTACCCCAAC
AGCAAATATGCCGCCGATGCAAGCGAACGCATGGCGAAACTGGTTGACGCTTTGGGCGGCAACGAAATCGCCGTGGCCCG
CTATTACATGAAACGCGGCGCTTATTTAGCTGCCGTGAACCGTGCCCAAAAAATTGTCGAACGTTATCAAAATACCCGTT
TTGTAGAAGAAGCTTTGGCGATTATGGAAGCCTCTTACCGCAAAATGGAAAAACCCCGGCTGGCCGACGATACCCGCCGT
ATTTTGGCACAAAATTTCCCCAACAGCCCTTATCTGACCAAATCTTGGTCTGACAGCAATATCCCTTGGTGGCGCTATTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

79.026

99.627

0.787
  comL Neisseria gonorrhoeae MS11

78.652

99.627

0.784