Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   LVJ88_RS02620 Genome accession   NZ_CP091509
Coordinates   582099..582656 (+) Length   185 a.a.
NCBI ID   WP_085418117.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 577099..587656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS02595 (LVJ88_02595) dnaB 577976..579388 (+) 1413 WP_054599357.1 replicative DNA helicase -
  LVJ88_RS02605 (LVJ88_02605) pilH 579706..580389 (+) 684 WP_085418115.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LVJ88_RS02610 (LVJ88_02610) pilV 580444..581172 (+) 729 WP_085418116.1 type IV pilus modification protein PilV -
  LVJ88_RS02615 (LVJ88_02615) - 581179..582120 (+) 942 WP_233127534.1 hypothetical protein -
  LVJ88_RS02620 (LVJ88_02620) pilK 582099..582656 (+) 558 WP_085418117.1 pilus assembly protein Machinery gene
  LVJ88_RS02630 (LVJ88_02630) - 582672..583124 (+) 453 WP_085418166.1 PilX family type IV pilin -
  LVJ88_RS02635 (LVJ88_02635) - 583535..584371 (+) 837 WP_085418119.1 mechanosensitive ion channel domain-containing protein -
  LVJ88_RS02640 (LVJ88_02640) - 584376..584885 (+) 510 WP_085418120.1 protein disulfide oxidoreductase -
  LVJ88_RS02645 (LVJ88_02645) clpX 585034..586314 (-) 1281 WP_085356082.1 ATP-dependent Clp protease ATP-binding subunit ClpX -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20028.87 Da        Isoelectric Point: 9.3208

>NTDB_id=651813 LVJ88_RS02620 WP_085418117.1 582099..582656(+) (pilK) [Neisseria dumasiana strain LMG 30012]
MRKPYTLKHINKSAQQGFSLFIVLMVMIVVAFFVVSVTQSYNTEQRISTNDADRKFAAALAEAALREGESKIAAFDGIVK
FTDNCTDAKCRAAGSSPGTFGDIIVEPGTSKVEAWERRNGGGKAKLLIDTNGGTLANMGASESPRYIIEYISTQDDGMVI
YRVTAKAWGKNKNTVVVLQSYVTAG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=651813 LVJ88_RS02620 WP_085418117.1 582099..582656(+) (pilK) [Neisseria dumasiana strain LMG 30012]
ATGCGCAAACCGTACACTTTAAAACACATCAATAAATCGGCACAACAAGGGTTTTCGTTGTTTATCGTGTTGATGGTGAT
GATTGTAGTGGCATTTTTTGTGGTGAGTGTGACGCAATCGTACAATACTGAACAGCGCATCAGTACTAATGATGCCGATA
GAAAATTTGCAGCAGCTTTAGCCGAAGCGGCATTAAGGGAAGGGGAAAGTAAAATTGCAGCCTTCGATGGTATCGTTAAA
TTCACGGATAATTGTACGGATGCGAAATGCCGTGCCGCAGGTAGTTCTCCCGGTACTTTCGGAGATATTATCGTTGAGCC
CGGTACTTCAAAGGTTGAAGCTTGGGAACGGCGCAATGGAGGCGGCAAAGCTAAACTTTTGATAGATACTAACGGAGGGA
CATTGGCGAACATGGGAGCAAGTGAATCACCGCGTTATATTATCGAATATATCAGCACTCAAGATGACGGCATGGTTATC
TATCGTGTTACCGCCAAAGCGTGGGGAAAAAATAAAAATACGGTAGTGGTTTTACAGTCCTATGTGACTGCAGGGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(135-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

51.5

100

0.557