Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LVJ88_RS02605 Genome accession   NZ_CP091509
Coordinates   579706..580389 (+) Length   227 a.a.
NCBI ID   WP_085418115.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 574706..585389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS02585 (LVJ88_02585) tsaD 575402..576466 (+) 1065 WP_085418113.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  LVJ88_RS02590 (LVJ88_02590) fabI 576675..577466 (-) 792 WP_054599358.1 enoyl-ACP reductase FabI -
  LVJ88_RS02595 (LVJ88_02595) dnaB 577976..579388 (+) 1413 WP_054599357.1 replicative DNA helicase -
  LVJ88_RS02605 (LVJ88_02605) pilH 579706..580389 (+) 684 WP_085418115.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LVJ88_RS02610 (LVJ88_02610) pilV 580444..581172 (+) 729 WP_085418116.1 type IV pilus modification protein PilV -
  LVJ88_RS02615 (LVJ88_02615) - 581179..582120 (+) 942 WP_233127534.1 hypothetical protein -
  LVJ88_RS02620 (LVJ88_02620) pilK 582099..582656 (+) 558 WP_085418117.1 pilus assembly protein Machinery gene
  LVJ88_RS02630 (LVJ88_02630) - 582672..583124 (+) 453 WP_085418166.1 PilX family type IV pilin -
  LVJ88_RS02635 (LVJ88_02635) - 583535..584371 (+) 837 WP_085418119.1 mechanosensitive ion channel domain-containing protein -
  LVJ88_RS02640 (LVJ88_02640) - 584376..584885 (+) 510 WP_085418120.1 protein disulfide oxidoreductase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24733.72 Da        Isoelectric Point: 7.7180

>NTDB_id=651812 LVJ88_RS02605 WP_085418115.1 579706..580389(+) (pilH) [Neisseria dumasiana strain LMG 30012]
MHSQSKGFTLIELLIVIAIVAIMATIALPNMSQWIASRRAAGQAEQVANLLRFARAEAVRLNAIVYVCPVQIKKDGNPDQ
YCDMKYTGQGLAAFADNNKNGIYERNEDTDLRTVILNSPQNTKVSYQVDNYAFSGERTGNNHMWGFLPNGTFGHKAQAAD
KLNHSTGYVKISLTDASASSEADKRARSTIVVIDSAGRATVCSGNSDGSQNSEDVMKNLCRYSSDNT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=651812 LVJ88_RS02605 WP_085418115.1 579706..580389(+) (pilH) [Neisseria dumasiana strain LMG 30012]
ATGCATTCACAGAGCAAAGGTTTTACCTTAATAGAATTACTGATCGTTATTGCGATTGTTGCCATTATGGCTACGATCGC
CCTCCCTAATATGAGCCAGTGGATTGCCTCGCGCCGTGCAGCGGGTCAGGCAGAACAAGTGGCCAATCTTTTGCGTTTTG
CAAGAGCGGAAGCGGTCCGCTTAAATGCCATTGTATATGTTTGCCCCGTCCAAATTAAAAAAGACGGCAATCCGGATCAA
TACTGCGACATGAAATATACAGGCCAAGGGCTTGCCGCGTTTGCAGACAACAATAAAAACGGCATTTATGAGCGCAATGA
AGACACGGATCTGCGTACGGTAATCCTTAATTCGCCGCAAAATACCAAAGTGAGTTATCAGGTTGATAATTATGCTTTCA
GCGGAGAACGCACCGGAAATAATCACATGTGGGGCTTCCTGCCCAACGGCACCTTCGGTCATAAAGCACAAGCCGCCGAC
AAATTAAACCACTCCACCGGATATGTAAAGATTTCTCTTACCGATGCATCAGCCAGTAGCGAGGCAGATAAAAGGGCGCG
CTCAACGATTGTTGTCATTGATAGTGCAGGTCGGGCAACCGTATGTTCGGGCAACTCCGATGGAAGTCAAAATTCTGAAG
ATGTTATGAAAAATTTATGTCGTTATAGCAGCGATAACACATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Type II transport protein GspH (GspH)

(43-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

52.885

91.63

0.485