Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LVJ83_RS09775 Genome accession   NZ_CP091508
Coordinates   2121124..2123409 (-) Length   761 a.a.
NCBI ID   WP_244784312.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 2116124..2128409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS09755 (LVJ83_09755) - 2116351..2116962 (-) 612 Protein_1913 site-specific integrase -
  LVJ83_RS09760 (LVJ83_09760) - 2116977..2117864 (-) 888 WP_244784310.1 IS982 family transposase -
  LVJ83_RS09765 (LVJ83_09765) - 2118374..2119057 (-) 684 WP_244784311.1 hypothetical protein -
  LVJ83_RS09770 (LVJ83_09770) radA 2119538..2120917 (+) 1380 WP_244787733.1 DNA repair protein RadA Machinery gene
  LVJ83_RS09775 (LVJ83_09775) comA 2121124..2123409 (-) 2286 WP_244784312.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LVJ83_RS09780 (LVJ83_09780) rlmB 2123557..2124306 (+) 750 WP_244784313.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LVJ83_RS09785 (LVJ83_09785) - 2124497..2125273 (+) 777 WP_244784314.1 glycosyltransferase family 2 protein -
  LVJ83_RS09790 (LVJ83_09790) - 2125364..2125864 (-) 501 WP_244784315.1 DUF1841 family protein -
  LVJ83_RS09800 (LVJ83_09800) - 2126721..2127005 (-) 285 WP_244784316.1 hypothetical protein -
  LVJ83_RS09805 (LVJ83_09805) - 2127056..2127349 (-) 294 WP_244784317.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LVJ83_RS09810 (LVJ83_09810) - 2127339..2127581 (-) 243 WP_244784318.1 type II toxin-antitoxin system prevent-host-death family antitoxin -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 82319.66 Da        Isoelectric Point: 10.2096

>NTDB_id=651796 LVJ83_RS09775 WP_244784312.1 2121124..2123409(-) (comA) [Uruburuella testudinis strain CCUG 63373m]
MLRYGLPLWVLGVVLSFALPAVPHWPAVIVLWLGLLAAAWRFRPLWLLCALLAGMGYGVWRTQAALAAQWPLQVVGSAVL
RLTVADLPQRDERRVRFRADAVDGEGRRYRLQLADYQLREWPVGSRWQVQARVRPPIGEVNGAGFNREAWALANGIGGIG
TVGKVREAMPPPPQARGDRAEILMWLPLWREQISRRWQAPDGQDMALSDGLGLMRALSIGEQSALSAAAWQAFRPLGVNH
LVSISGLHVGMVALMAGWLVGRGLRFLPFTPSRPRTLMLVAGVTAGLLYAGLAGFSVPTQRSVLMLLALAWAWWRGSGAS
VWRGWWQALALVLLIDPASVLAAGFWLSFGLVAALLWVSSGRYREAGRGWHLAAQGQWAVTVLSVVLLGSVFASVPLISP
LVNAVAIPWFSWVLVPLALLASLLPWPPLQWLAAAAGEYTLRLLIWLAAQAPEYAVAAAPWPLVCLAVLAAGVLLLPRGL
GLKPLACLVLAGFVWYRPPPVGEGRLKAVVWDVGQGLSVLLQTRQHRLLFDTGTEAAAGMAVLPGLNAAGVRGLDALVLS
HQDADHDGGFAAVKQAKKPRRLWAGQPAFYAGAQDCAEQSWQWDGVQFEFLRVSARPDGKGDAPDSMHDNDQSCVLRVVA
GNQALLVGGDLGRAGERALVAQYGEALYSQVLLLGHHGSNSSSDGSFLNAVAPQYAVASSGYGNAYNHPAPAVQSRVRAH
GIRLLRTDRQGALYFELGGDEVLQGRLKTDKPYWQKKPFAD

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=651796 LVJ83_RS09775 WP_244784312.1 2121124..2123409(-) (comA) [Uruburuella testudinis strain CCUG 63373m]
GTGTTGCGCTACGGGTTGCCGTTGTGGGTGTTGGGGGTGGTGTTGTCGTTTGCTTTGCCGGCTGTGCCGCATTGGCCGGC
GGTAATAGTGTTGTGGCTGGGTTTGCTGGCGGCGGCCTGGCGTTTCCGGCCGTTGTGGTTGTTGTGCGCGCTGCTGGCGG
GGATGGGTTACGGCGTGTGGCGTACGCAAGCGGCGTTGGCGGCGCAGTGGCCGTTACAGGTGGTGGGTAGTGCGGTGCTG
AGGCTAACGGTGGCGGATTTGCCGCAGCGTGATGAGCGGCGGGTGCGTTTTCGGGCGGATGCGGTGGATGGGGAAGGCCG
TCGCTACCGTTTGCAGCTTGCCGATTATCAGCTGCGCGAATGGCCGGTGGGCAGCCGTTGGCAGGTGCAGGCGCGGGTGC
GGCCGCCTATAGGCGAGGTGAATGGCGCGGGGTTTAACCGCGAGGCTTGGGCGCTGGCCAACGGTATCGGCGGCATCGGC
ACGGTGGGCAAGGTGCGTGAGGCCATGCCGCCTCCGCCGCAGGCACGGGGTGATAGGGCTGAAATTTTGATGTGGCTGCC
GTTGTGGCGCGAGCAGATCAGCCGCCGTTGGCAAGCACCCGATGGGCAGGATATGGCGCTTTCAGACGGCCTGGGTTTGA
TGCGGGCCTTGAGTATCGGCGAGCAATCGGCGCTGAGTGCGGCGGCGTGGCAGGCATTCCGGCCTTTAGGGGTAAACCAT
TTGGTGAGTATTTCAGGGCTGCATGTGGGCATGGTGGCGCTGATGGCAGGTTGGTTGGTGGGCAGAGGGTTGCGTTTTTT
GCCGTTTACGCCATCGCGGCCGCGCACTTTGATGTTGGTGGCAGGGGTGACGGCGGGCTTGCTGTATGCGGGGCTGGCCG
GGTTTTCGGTGCCGACCCAACGCAGTGTGCTGATGTTGTTGGCGCTTGCTTGGGCTTGGTGGCGCGGCAGCGGTGCCTCG
GTGTGGCGCGGGTGGTGGCAGGCTTTGGCATTGGTGCTGCTGATTGATCCGGCATCGGTGTTGGCGGCGGGGTTTTGGCT
GTCGTTCGGTTTGGTGGCGGCCCTGCTTTGGGTGTCTTCGGGGCGCTATCGTGAAGCGGGGCGGGGCTGGCATTTGGCGG
CTCAGGGGCAGTGGGCGGTAACGGTGTTGTCGGTGGTGTTGCTCGGCAGTGTGTTTGCTTCGGTGCCGCTCATCAGCCCG
TTGGTCAATGCGGTGGCGATTCCGTGGTTTTCTTGGGTGTTGGTGCCGTTGGCGCTGCTGGCTTCATTGCTGCCGTGGCC
GCCTTTGCAGTGGCTGGCGGCCGCGGCAGGTGAATATACTTTGCGCCTGCTGATATGGCTGGCTGCGCAGGCGCCGGAAT
ATGCGGTGGCGGCGGCTCCCTGGCCGTTGGTGTGTTTGGCGGTGTTGGCAGCAGGGGTGTTGCTGCTGCCGCGCGGTTTG
GGTTTGAAACCGTTGGCATGTTTGGTGTTGGCAGGGTTTGTTTGGTATCGGCCGCCACCGGTTGGCGAAGGCCGTCTGAA
AGCGGTGGTGTGGGATGTGGGGCAGGGTTTGTCGGTGTTGCTGCAAACCCGCCAGCACCGCCTGTTGTTCGACACGGGCA
CAGAGGCGGCCGCGGGGATGGCGGTGTTGCCGGGCTTGAATGCTGCGGGCGTGCGCGGGCTGGATGCTTTGGTGCTGTCG
CATCAGGATGCCGACCACGATGGCGGTTTTGCGGCGGTAAAACAGGCCAAAAAGCCGCGCAGGTTGTGGGCGGGGCAGCC
GGCGTTTTATGCGGGGGCGCAAGATTGTGCCGAACAAAGTTGGCAGTGGGATGGCGTGCAGTTTGAGTTTTTACGTGTTT
CTGCGCGGCCGGATGGCAAGGGTGATGCGCCCGACAGTATGCATGATAACGATCAAAGCTGCGTGCTGCGCGTGGTGGCG
GGCAATCAGGCTTTGCTGGTCGGCGGGGATTTGGGGCGGGCGGGAGAGCGCGCCTTAGTGGCGCAGTATGGTGAAGCGCT
TTACAGCCAAGTGTTGCTGCTGGGCCATCACGGCAGTAATTCATCGTCGGACGGCAGTTTTCTGAATGCCGTCGCGCCGC
AATATGCGGTGGCTTCAAGCGGTTACGGTAATGCTTACAATCATCCGGCACCGGCAGTGCAAAGCCGCGTGCGCGCCCAC
GGTATCCGGCTGTTGCGCACTGATCGGCAAGGGGCTTTGTATTTTGAACTTGGCGGTGATGAAGTGCTGCAAGGCCGTCT
GAAAACAGACAAGCCGTATTGGCAGAAAAAACCGTTTGCAGATTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(512-698)

Domain of unknown function (DUF4131) (DUF4131)

(5-166)

Competence protein (Competence)

(217-476)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

59.816

99.737

0.597