Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVJ83_RS09770 Genome accession   NZ_CP091508
Coordinates   2119538..2120917 (+) Length   459 a.a.
NCBI ID   WP_244787733.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2114538..2125917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS09725 (LVJ83_09725) pgsA 2115095..2115661 (+) 567 WP_244784308.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LVJ83_RS09755 (LVJ83_09755) - 2116351..2116962 (-) 612 Protein_1913 site-specific integrase -
  LVJ83_RS09760 (LVJ83_09760) - 2116977..2117864 (-) 888 WP_244784310.1 IS982 family transposase -
  LVJ83_RS09765 (LVJ83_09765) - 2118374..2119057 (-) 684 WP_244784311.1 hypothetical protein -
  LVJ83_RS09770 (LVJ83_09770) radA 2119538..2120917 (+) 1380 WP_244787733.1 DNA repair protein RadA Machinery gene
  LVJ83_RS09775 (LVJ83_09775) comA 2121124..2123409 (-) 2286 WP_244784312.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LVJ83_RS09780 (LVJ83_09780) rlmB 2123557..2124306 (+) 750 WP_244784313.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LVJ83_RS09785 (LVJ83_09785) - 2124497..2125273 (+) 777 WP_244784314.1 glycosyltransferase family 2 protein -
  LVJ83_RS09790 (LVJ83_09790) - 2125364..2125864 (-) 501 WP_244784315.1 DUF1841 family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49551.05 Da        Isoelectric Point: 6.7569

>NTDB_id=651795 LVJ83_RS09770 WP_244787733.1 2119538..2120917(+) (radA) [Uruburuella testudinis strain CCUG 63373m]
MAKAPKTIYQCSECGGTTPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADVSQVQALSEVTATEVPRNPTGMGELD
RVLGGGLVNGAVILLGGDPGIGKSTLLLQTIALMAQSRKVLYVSGEESAQQVALRAQRLEVQPDGVNLLAEIRMEAIQTA
LKQHEPDVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGISMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DTHSNYRMIRAIKNRFGAANELGVFAMTEHGLKGVSNPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKINEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNPKEYPGLQIFGVSSLQEAVDVCRHTPE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=651795 LVJ83_RS09770 WP_244787733.1 2119538..2120917(+) (radA) [Uruburuella testudinis strain CCUG 63373m]
ATGGCAAAAGCACCGAAAACGATTTATCAATGCAGCGAATGCGGCGGCACCACGCCGAAATGGCAGGGAAAATGCCCGCA
TTGCGGCGAATGGAACACTTTGCAGGAAAGCCTGGCCGCGCCGGAGCCGAAAAACGCGCGTTTCCAATCGTGGGCGGCAG
ATGTATCGCAAGTGCAGGCGTTATCGGAAGTCACCGCCACCGAAGTGCCGCGCAATCCCACCGGCATGGGCGAGCTTGAC
CGGGTGCTCGGCGGCGGCCTGGTAAACGGCGCGGTGATTCTGCTCGGCGGCGACCCGGGCATCGGCAAATCTACCCTGCT
TTTGCAAACCATCGCGCTGATGGCACAAAGCCGCAAGGTGCTGTATGTGTCGGGCGAAGAATCGGCGCAACAAGTGGCTT
TGCGCGCGCAGCGCCTGGAAGTGCAGCCCGACGGCGTCAACCTATTGGCAGAAATCCGCATGGAAGCGATTCAGACGGCC
TTAAAACAGCATGAGCCTGATGTGGTGGTGATTGATTCGATTCAAACCATGTATTCCGATCAGATTACTTCGGCGCCGGG
CTCGGTATCGCAAGTGCGCGAATGTGCCGCACAGCTCACCCGCATGGCCAAGCAGATGGGTATCAGCATGATTCTGGTCG
GCCATGTTACCAAAGACGGCGCCATCGCCGGCCCGCGCGTGCTGGAGCATATGGTGGATACGGTGCTTTATTTCGAGGGC
GACACCCATTCCAATTACCGCATGATACGTGCGATTAAAAACCGCTTCGGCGCCGCCAACGAGCTGGGGGTGTTTGCCAT
GACCGAACACGGCTTGAAAGGCGTCTCAAACCCATCGGCGATTTTTCTGGCCAGCTACCGTGACGATGTGCCCGGTTCGT
GCGTATTGGTGACTCAAGAAGGCAGCCGCCCGCTGTTGGTGGAAATTCAGGCGCTGGTAGACGATGCCCACGGCTTCACG
CCCAAACGGCTTACCGTAGGCTTGGAGCAAAACCGCCTCGCCATGCTGCTGGCGGTGCTCAACCGCCATGCCGGCATCGC
CTGTTTTGATCAAGATGTATTTCTGAATGCGGTGGGCGGTGTCAAAATCAACGAGCCGGCAGCCGACTTGGCGGTTATTC
TGGCCATGCTTTCCAGCTTCCGCAACCGCCCGTTGCCTGAAAAAATGGTCGCATTCGGCGAAATCGGTTTGAGCGGCGAA
GTGCGGCCGGTGGCGCGCGGGCAAGAGCGGCTGAAAGAAGCGGAAAAACTCGGTTTCAAACGCGCCATCGTGCCCAAAGC
CAATATGCCGCGCAATCCCAAAGAATACCCCGGCTTGCAGATTTTCGGCGTCAGCAGCCTGCAAGAAGCAGTTGATGTGT
GCCGCCATACGCCAGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.328

99.564

0.501
  radA Streptococcus mitis NCTC 12261

48.124

98.693

0.475
  radA Streptococcus pneumoniae Rx1

47.903

98.693

0.473
  radA Streptococcus pneumoniae D39

47.903

98.693

0.473
  radA Streptococcus pneumoniae R6

47.903

98.693

0.473
  radA Streptococcus pneumoniae TIGR4

47.903

98.693

0.473
  radA Streptococcus mitis SK321

47.682

98.693

0.471