Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   LVJ83_RS05675 Genome accession   NZ_CP091508
Coordinates   1231061..1231609 (+) Length   182 a.a.
NCBI ID   WP_244787152.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1226061..1236609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS05650 (LVJ83_05650) - 1226325..1226906 (-) 582 WP_244787142.1 superoxide dismutase -
  LVJ83_RS05655 (LVJ83_05655) dnaB 1227103..1228515 (+) 1413 WP_244787144.1 replicative DNA helicase -
  LVJ83_RS05660 (LVJ83_05660) pilH 1228684..1229346 (+) 663 WP_244787146.1 GspH/FimT family pseudopilin Machinery gene
  LVJ83_RS05665 (LVJ83_05665) pilV 1229356..1230027 (+) 672 WP_244787148.1 type IV pilus modification protein PilV -
  LVJ83_RS05670 (LVJ83_05670) - 1230024..1231082 (+) 1059 WP_244787150.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LVJ83_RS05675 (LVJ83_05675) pilK 1231061..1231609 (+) 549 WP_244787152.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LVJ83_RS05685 (LVJ83_05685) - 1231621..1232109 (+) 489 WP_280515227.1 PilX family type IV pilin -
  LVJ83_RS05690 (LVJ83_05690) - 1232345..1232755 (-) 411 WP_244787154.1 hypothetical protein -
  LVJ83_RS05695 (LVJ83_05695) - 1233240..1235009 (-) 1770 WP_244787156.1 ABC transporter ATP-binding protein/permease -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19569.27 Da        Isoelectric Point: 7.6082

>NTDB_id=651787 LVJ83_RS05675 WP_244787152.1 1231061..1231609(+) (pilK) [Uruburuella testudinis strain CCUG 63373m]
MRRPCHLNHAKAPQQGFALFIVLMMMIVIAFLVVAVTQSYNTEMRIGSNDADRKMAMSLAEAALRRGEGDIADLGNPAFT
QNCTGGLCTLAGAQAATQGSVTIGADSSNVAAWERQCGNSGCLESNGRVYAAGSEVSRPPRYIIEFIDAKTDDRMIYRVT
ARAWGRNANTVVTVQSYVEVAS

Nucleotide


Download         Length: 549 bp        

>NTDB_id=651787 LVJ83_RS05675 WP_244787152.1 1231061..1231609(+) (pilK) [Uruburuella testudinis strain CCUG 63373m]
ATGCGCAGACCGTGCCATTTAAACCATGCCAAAGCGCCGCAACAGGGTTTCGCCTTGTTTATCGTGTTGATGATGATGAT
CGTGATCGCTTTTTTGGTGGTGGCGGTGACGCAGTCGTATAACACGGAAATGCGCATCGGCAGCAATGATGCCGATCGGA
AAATGGCGATGTCGCTGGCTGAAGCGGCTTTGCGCCGAGGCGAGGGAGATATTGCCGATTTGGGTAATCCTGCGTTTACG
CAAAACTGCACCGGCGGCTTGTGTACGCTTGCCGGGGCGCAGGCCGCTACGCAGGGCAGTGTAACAATCGGCGCCGACAG
CTCCAATGTAGCGGCTTGGGAGCGGCAATGCGGTAACAGCGGCTGCCTGGAAAGCAACGGCCGGGTTTATGCTGCCGGCT
CCGAAGTCAGCAGGCCGCCGCGTTACATTATCGAATTTATCGATGCCAAAACCGACGACCGCATGATTTACCGGGTAACT
GCCCGTGCGTGGGGGCGCAATGCCAACACGGTGGTAACGGTGCAGTCTTATGTGGAAGTGGCCTCTTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(15-65)

Type IV pilus assembly protein PilX C-term (PilX)

(86-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

48.634

100

0.489