Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OHA05_RS26130 Genome accession   NZ_CP108032
Coordinates   5827999..5829222 (+) Length   407 a.a.
NCBI ID   WP_313943853.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00306     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5822999..5834222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS26115 (OHA05_26125) - 5823755..5825173 (+) 1419 WP_313943856.1 sugar porter family MFS transporter -
  OHA05_RS26120 (OHA05_26130) - 5825251..5826225 (-) 975 WP_328861856.1 LLM class flavin-dependent oxidoreductase -
  OHA05_RS26125 (OHA05_26135) - 5826360..5827823 (-) 1464 WP_328861857.1 cytosine permease -
  OHA05_RS26130 (OHA05_26140) pilA 5827999..5829222 (+) 1224 WP_313943853.1 signal recognition particle-docking protein FtsY Machinery gene
  OHA05_RS26135 (OHA05_26145) - 5829347..5830000 (-) 654 WP_313943852.1 bifunctional DNA primase/polymerase -
  OHA05_RS26140 (OHA05_26150) - 5830428..5831900 (+) 1473 WP_313943851.1 hypothetical protein -
  OHA05_RS26145 (OHA05_26155) - 5832240..5833595 (+) 1356 WP_313943850.1 ammonium transporter -
  OHA05_RS26150 (OHA05_26160) - 5833592..5833930 (+) 339 WP_313943849.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 42788.84 Da        Isoelectric Point: 4.4165

>NTDB_id=651786 OHA05_RS26130 WP_313943853.1 5827999..5829222(+) (pilA) [Streptomyces sp. NBC_00306]
MEIVILAVVIALVALGAISGLVVSSRKKKQLPPSAPSSTPTITAPPAEPHVGDEAETPRDEPRRTIEEVDLPSAEEAADT
PVAVEDPVVAEPPAPAIEIPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEETWEEIEDTLLTADVGVAPTQELV
ERLRERVRVLGTRTPDDLRNLLREELLALIGTDVDRAVKTESGLDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVL
GAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK
HGPLDEILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAF
VDALIGE

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=651786 OHA05_RS26130 WP_313943853.1 5827999..5829222(+) (pilA) [Streptomyces sp. NBC_00306]
ATGGAAATCGTCATCCTTGCCGTAGTCATCGCCCTGGTCGCTCTCGGCGCGATCAGCGGTCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGTCGAGCACGCCGACCATCACCGCTCCGCCCGCCGAGCCGCATGTCGGCGACG
AGGCGGAGACACCGCGGGACGAGCCACGCCGGACCATCGAGGAGGTCGACCTCCCGTCGGCCGAGGAGGCCGCCGACACG
CCGGTCGCCGTCGAGGACCCGGTCGTCGCCGAGCCCCCCGCCCCCGCGATCGAGATCCCGGAGCCCACCGCCGGCCGGCT
CGTCCGGCTGCGTGCCCGCCTCGCCCGCTCGCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGCGAGCACC
TCGACGAGGAGACATGGGAGGAGATCGAGGACACGCTGCTCACCGCCGACGTCGGTGTGGCGCCGACCCAGGAACTCGTC
GAGCGCCTGCGCGAGCGGGTCAGGGTGCTCGGCACCCGTACGCCGGACGATCTGCGCAACCTGCTCCGCGAGGAGCTGCT
GGCGCTCATCGGCACCGACGTCGACCGCGCGGTCAAGACCGAGAGCGGCCTGGACACCCCGGGCGTCGTCATGGTCGTCG
GTGTCAACGGCACCGGTAAGACCACCACGACCGGCAAGCTCGCCCGGGTGCTCGTCGCCGACGGCCGCTCGGTCGTCCTC
GGCGCCGCGGACACCTTCCGTGCGGCGGCGGCCGATCAGCTCCAGACGTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCG
CGGACCCGAGGGCGGCGACCCGGCCTCGATCGCGTTCGACGCCGTGAAGGAAGGCATCGCCGAGGGCGCCGACGTGGTGC
TCATCGACACGGCGGGCCGGCTGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAG
CACGGCCCGCTGGACGAGATCCTGCTGGTCCTCGACGCCACGACCGGTCAGAACGGTCTGGTGCAGGCGCGGGTGTTCGC
GGAGGTCGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCGGTCCAGC
GTGAGCTGGGCGTACCGGTGAAGCTGGTGGGTCTGGGCGAGGGCGCCGACGACCTGGCGCCGTTCGAGCCGGAGGCGTTC
GTCGACGCGCTCATCGGGGAGTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(208-405)

SRP54-type protein, helical bundle domain (SRP54_N)

(121-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.225

100

0.398