Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ78_RS09000 Genome accession   NZ_CP091507
Coordinates   1986566..1987369 (+) Length   267 a.a.
NCBI ID   WP_132952011.1    Uniprot ID   A0AAE9GW02
Organism   Uruburuella suis strain 1258/02     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1981566..1992369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS08985 (LVJ78_08985) brnQ 1982830..1984173 (-) 1344 WP_243650309.1 branched-chain amino acid transport system II carrier protein -
  LVJ78_RS08990 (LVJ78_08990) pgeF 1984475..1985269 (-) 795 WP_132952015.1 peptidoglycan editing factor PgeF -
  LVJ78_RS08995 (LVJ78_08995) rluD 1985449..1986567 (-) 1119 WP_132952013.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ78_RS09000 (LVJ78_09000) comL 1986566..1987369 (+) 804 WP_132952011.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ78_RS09005 (LVJ78_09005) - 1987442..1988482 (-) 1041 WP_132952009.1 zinc-dependent alcohol dehydrogenase family protein -
  LVJ78_RS09010 (LVJ78_09010) mutY 1988778..1989836 (+) 1059 WP_132952005.1 A/G-specific adenine glycosylase -
  LVJ78_RS09015 (LVJ78_09015) grxB 1990123..1990770 (-) 648 WP_132952003.1 glutaredoxin 2 -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31005.89 Da        Isoelectric Point: 7.2668

>NTDB_id=651755 LVJ78_RS09000 WP_132952011.1 1986566..1987369(+) (comL) [Uruburuella suis strain 1258/02]
MKKILLVVTLGLALAGCANTGTIDKDAQMTQDWTVDRLYTEAQDELNSNNYTRAVKLYEILESRFPNGRHAQQAQLDTAY
AYYKDDEPAKALAAIERFQRMYPQHPNMDYALYLKGLVLFNEDQSFLNRLASQDWSDRDPKANREAYQAFAELVQRYPDS
RYAPDATERMAKLVDALGGNEIAVARYYMRRGAYLAANNRAQKVVQQYQNTRFVEEALAIMAQSYQHINQPQLAEDTRRI
LAQNFPNSPYLTQAWKADTMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=651755 LVJ78_RS09000 WP_132952011.1 1986566..1987369(+) (comL) [Uruburuella suis strain 1258/02]
ATGAAAAAAATTCTTTTAGTAGTTACCCTGGGCTTGGCGCTGGCCGGCTGCGCTAACACCGGCACCATCGATAAAGATGC
GCAGATGACCCAGGATTGGACGGTGGATCGTCTCTACACCGAAGCGCAAGACGAATTAAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTGGAATCGCGCTTCCCCAACGGCCGCCACGCCCAGCAAGCACAGCTCGACACCGCCTAT
GCTTATTATAAAGACGATGAGCCGGCTAAAGCGCTGGCCGCCATCGAGCGTTTCCAGCGCATGTATCCGCAGCATCCGAA
TATGGATTATGCCCTTTATCTCAAAGGCTTGGTGCTCTTTAACGAAGACCAATCCTTCCTCAACCGCTTGGCTTCGCAAG
ATTGGTCCGACCGCGACCCCAAAGCCAACCGCGAAGCTTATCAGGCTTTTGCCGAACTGGTGCAACGTTATCCCGACAGC
CGCTACGCGCCCGACGCCACCGAGCGCATGGCCAAGCTTGTAGACGCTTTGGGCGGCAACGAAATCGCCGTGGCCCGCTA
TTATATGCGCCGCGGCGCTTATCTGGCGGCCAACAATCGCGCCCAAAAAGTGGTGCAGCAATATCAAAACACCCGCTTTG
TGGAAGAAGCGCTGGCGATTATGGCGCAGTCTTACCAGCACATAAACCAGCCGCAGCTGGCCGAAGACACCCGCCGCATT
TTGGCGCAAAACTTCCCCAACAGCCCCTATCTCACCCAAGCTTGGAAAGCCGACACCATGCCTTGGTGGCGCTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

77.068

99.625

0.768
  comL Neisseria meningitidis MC58

76.692

99.625

0.764