Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LVJ78_RS08915 Genome accession   NZ_CP091507
Coordinates   1963837..1966083 (-) Length   748 a.a.
NCBI ID   WP_132952043.1    Uniprot ID   A0AAE9GTL7
Organism   Uruburuella suis strain 1258/02     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1958837..1971083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS08905 (LVJ78_08905) cas5c 1960365..1961099 (-) 735 WP_132952046.1 type I-C CRISPR-associated protein Cas5c -
  LVJ78_RS08910 (LVJ78_08910) cas3 1961109..1963586 (-) 2478 WP_243650310.1 CRISPR-associated helicase Cas3' -
  LVJ78_RS08915 (LVJ78_08915) comA 1963837..1966083 (-) 2247 WP_132952043.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LVJ78_RS08920 (LVJ78_08920) rlmB 1966583..1967335 (+) 753 WP_132952041.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LVJ78_RS08925 (LVJ78_08925) - 1967549..1967965 (+) 417 WP_132952039.1 NfeD family protein -
  LVJ78_RS08930 (LVJ78_08930) - 1967994..1968956 (+) 963 WP_132952037.1 stomatin-like protein -
  LVJ78_RS08935 (LVJ78_08935) - 1969506..1970024 (-) 519 WP_132952036.1 hypothetical protein -
  LVJ78_RS08940 (LVJ78_08940) - 1970021..1970392 (-) 372 WP_132952034.1 hypothetical protein -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 80858.00 Da        Isoelectric Point: 9.7537

>NTDB_id=651754 LVJ78_RS08915 WP_132952043.1 1963837..1966083(-) (comA) [Uruburuella suis strain 1258/02]
MRAYLLPFWALGVILSFALPAVPAWPAVAALWLLLLAVAWRCKPFMLLCALLAGMAYGVWRTERDLAAQWPLQAAGGVAL
VITVADLPQRDERRVRFAADAVDEAGRRYRLQLSDYQLREWPSGSRWRVAARIRPPVGEVNPAGFNREAWALAGGIGGMG
TLGKERLEMPSESAGLVSPLLGWREHISRRWQAVDTRGHALSDGLGLMRALSIGEQGALPPQAWQAFRPLGVNHLVSISG
LHVGMVALMAGWLMKKLLRFSPYLPGRPRVWVLAAAVAAGLLYAGLAGFSVPTQRSVLMLLALAWAWWRGSGASVWRGWW
QALALVLLMAPAAALSVGFWLSFGLVAALLWVSFGRLDEGRRGWRLALEGQWAVSLLSVVALGVLFASLPLISPLVNALA
IPWFSWVLVPLALIASLLPWPPLQWLAAAAGEYTLRALIWLAGHAPEYAVAAAPWPLVGLSVAAVGLLLLPRGLGLRPFA
LLVLAGFVCYRPPPVAEGRLKAVVWDAGQGLSVWLQTADYALLFDTGTEGAANMAVLPSLNAVGVRHLDALVLSHQDADH
DGGFAAVAQAKKPAVLWAGQPEFYPQAQHCAEQSWQWNSVHFEFLRPSEDFAGQSDNDQSCVLRVLAGSSALLLTGDLGQ
AGERALVARYGEKLYSQVLLLGHHGSNSSSAGTFLNAVSPRYAVASSGYANAYNHPAPAVQARVRAHGGTLLRTDRQGAL
LFELDGEEVTAGRLKTWQPYWQKKPFAD

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=651754 LVJ78_RS08915 WP_132952043.1 1963837..1966083(-) (comA) [Uruburuella suis strain 1258/02]
TTGCGGGCTTATCTGTTGCCATTTTGGGCGCTGGGCGTGATTTTATCGTTTGCGCTGCCTGCCGTGCCTGCGTGGCCGGC
GGTGGCGGCGCTGTGGCTGCTTTTGCTGGCGGTGGCTTGGCGCTGCAAGCCTTTTATGTTGCTGTGTGCTTTGTTGGCGG
GCATGGCTTACGGCGTGTGGCGCACCGAGCGGGATTTGGCGGCGCAATGGCCGTTGCAGGCGGCGGGCGGGGTGGCTTTG
GTGATTACGGTGGCGGATTTGCCACAGCGCGATGAGCGGCGGGTGCGCTTTGCGGCGGATGCGGTGGATGAGGCTGGGCG
GCGCTATCGTTTGCAGCTTTCGGATTATCAGTTGCGCGAGTGGCCCTCGGGCAGCCGCTGGCGTGTGGCGGCGCGCATCA
GGCCGCCGGTGGGCGAGGTGAATCCGGCCGGTTTCAATCGCGAAGCGTGGGCGCTGGCCGGTGGCATCGGCGGCATGGGC
ACGCTGGGCAAGGAGCGGCTGGAAATGCCGTCTGAAAGCGCGGGGCTTGTTTCGCCGCTTTTGGGCTGGCGCGAACACAT
CAGCCGCCGCTGGCAGGCGGTGGACACGCGCGGCCATGCGCTTTCAGACGGCCTCGGCTTGATGCGGGCGCTGAGCATAG
GCGAGCAGGGCGCGTTGCCGCCGCAGGCTTGGCAGGCGTTTCGGCCTTTGGGGGTGAACCATTTGGTGAGCATTTCGGGG
CTGCATGTGGGCATGGTGGCACTGATGGCGGGCTGGCTGATGAAAAAGCTGCTGCGTTTTTCGCCTTATCTGCCCGGCCG
GCCGCGCGTGTGGGTGCTGGCGGCTGCTGTGGCGGCGGGCTTGCTTTATGCGGGCTTGGCGGGCTTTTCGGTGCCGACAC
AACGCAGCGTGTTGATGCTGCTGGCCTTGGCTTGGGCATGGTGGCGCGGCAGCGGCGCTTCGGTGTGGCGCGGTTGGTGG
CAGGCTTTGGCGCTGGTGCTGCTGATGGCACCGGCGGCGGCGCTGAGCGTGGGTTTTTGGCTCTCGTTTGGTTTGGTGGC
GGCTTTGCTGTGGGTGTCGTTCGGGCGGCTTGATGAGGGCAGGCGCGGCTGGCGATTGGCGCTGGAAGGGCAATGGGCGG
TGTCGTTGCTGTCGGTGGTGGCGCTGGGGGTGTTGTTTGCTTCGCTGCCGCTGATCAGCCCGCTGGTGAATGCGCTGGCG
ATTCCTTGGTTTTCGTGGGTGTTGGTGCCTTTGGCGCTCATCGCTTCGCTGCTGCCGTGGCCGCCTTTGCAATGGCTGGC
GGCGGCGGCCGGCGAATACACTCTGCGCGCGCTGATTTGGCTGGCGGGGCATGCGCCGGAATATGCGGTGGCGGCGGCAC
CGTGGCCGCTGGTGGGGCTCTCGGTGGCCGCGGTGGGGCTTTTGCTGCTGCCGCGCGGCTTGGGTTTGCGGCCGTTTGCG
CTGCTGGTGTTGGCAGGCTTTGTGTGTTACCGCCCGCCGCCGGTGGCGGAAGGCCGTCTGAAAGCGGTGGTGTGGGATGC
GGGGCAGGGTTTGTCGGTGTGGCTGCAAACGGCCGATTATGCGCTGTTGTTTGACACGGGCACCGAGGGTGCGGCCAATA
TGGCGGTGCTGCCGAGCCTGAATGCGGTGGGCGTGCGGCATCTGGATGCGTTGGTGCTCTCACATCAAGATGCCGACCAC
GATGGCGGCTTTGCTGCGGTGGCGCAGGCGAAAAAGCCGGCGGTGTTGTGGGCGGGGCAGCCTGAGTTTTATCCGCAGGC
GCAGCATTGCGCAGAGCAAAGCTGGCAATGGAACAGCGTGCATTTTGAGTTTTTGAGGCCGTCTGAAGATTTTGCCGGCC
AAAGCGACAACGACCAAAGCTGCGTGTTGCGTGTGTTGGCGGGCAGCTCGGCTTTATTGCTCACCGGCGATTTGGGGCAG
GCGGGCGAGCGGGCGCTGGTGGCACGCTATGGCGAAAAACTTTATAGCCAGGTGCTGCTGCTCGGCCATCACGGCAGCAA
TTCTTCATCGGCCGGCACGTTTCTAAATGCAGTTTCGCCGCGCTATGCCGTGGCTTCGAGCGGCTATGCCAATGCGTATA
ACCACCCCGCACCGGCCGTGCAAGCGCGAGTGCGCGCCCACGGCGGCACGCTCTTGCGCACCGACAGGCAGGGGGCATTG
CTTTTTGAGCTGGACGGAGAAGAAGTAACGGCAGGCCGTCTGAAAACATGGCAGCCTTATTGGCAGAAAAAACCGTTTGC
GGATTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(507-685)

Domain of unknown function (DUF4131) (DUF4131)

(23-162)

Competence protein (Competence)

(211-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

61.26

99.733

0.611
  comA Pseudomonas stutzeri DSM 10701

37.032

100

0.37