Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA05_RS07590 Genome accession   NZ_CP108032
Coordinates   1691167..1691811 (-) Length   214 a.a.
NCBI ID   WP_313947155.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00306     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686167..1696811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS07565 (OHA05_07575) - 1686946..1687878 (-) 933 WP_313947160.1 SPFH domain-containing protein -
  OHA05_RS07570 (OHA05_07580) - 1687970..1688398 (-) 429 WP_327684969.1 NfeD family protein -
  OHA05_RS07575 (OHA05_07585) - 1688605..1689396 (-) 792 WP_328860122.1 ABC transporter ATP-binding protein -
  OHA05_RS07580 (OHA05_07590) - 1689532..1690311 (+) 780 WP_313947157.1 hypothetical protein -
  OHA05_RS07585 (OHA05_07595) - 1690779..1691027 (-) 249 WP_328860123.1 chaplin -
  OHA05_RS07590 (OHA05_07600) vraR 1691167..1691811 (-) 645 WP_313947155.1 response regulator transcription factor Regulator
  OHA05_RS07595 (OHA05_07605) - 1691804..1692949 (-) 1146 WP_313947154.1 GAF domain-containing sensor histidine kinase -
  OHA05_RS07600 (OHA05_07610) - 1693166..1693861 (+) 696 WP_328860124.1 SDR family oxidoreductase -
  OHA05_RS07605 (OHA05_07615) - 1693858..1694961 (+) 1104 WP_328860125.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHA05_RS07610 (OHA05_07620) - 1695240..1695962 (+) 723 WP_313947151.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23226.53 Da        Isoelectric Point: 5.6880

>NTDB_id=651734 OHA05_RS07590 WP_313947155.1 1691167..1691811(-) (vraR) [Streptomyces sp. NBC_00306]
MADRTIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAGDGDEGVARAEELKPDVVLMDVKMPGTDGIEALRKLRDLSNPA
RVLIVTSFTEQRTVVPALRAGASGYVYKDVDPEALARAIRSVHAGHVLLQPEVAGALLSQDEPGNGMGRGGSLTEREKEV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLTN

Nucleotide


Download         Length: 645 bp        

>NTDB_id=651734 OHA05_RS07590 WP_313947155.1 1691167..1691811(-) (vraR) [Streptomyces sp. NBC_00306]
GTGGCTGACAGGACTATTCGCGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGTGGGCTGCGCACCTTCCTCGAGGT
CCAGGACGACATCGAGGTGGTCGGTGAGGCGGGCGACGGGGACGAGGGCGTGGCCCGCGCGGAGGAACTGAAACCGGACG
TCGTCCTGATGGACGTGAAGATGCCCGGAACCGACGGCATCGAGGCCCTGCGCAAGCTGCGTGACCTCTCCAACCCGGCC
CGCGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCCGCCCTGCGGGCCGGCGCTTCGGGCTATGTCTA
CAAGGACGTCGACCCGGAGGCCCTCGCCCGCGCCATCCGCTCCGTCCACGCGGGCCATGTACTGCTCCAGCCCGAGGTCG
CGGGCGCGCTGCTGTCCCAGGACGAGCCGGGCAACGGCATGGGCCGCGGGGGTTCGCTCACGGAGCGCGAGAAGGAGGTG
CTCGGCCTGATCGCGGACGGCCGGTCCAACCGCGAGATCGCCCGCGCGCTCGTCCTGTCCGAGAAGACCGTCAAGACGCA
TGTCTCGAACATCCTGATGAAGCTGGACCTCGCGGACCGCACACAGGCGGCGCTGTGGGCCGTACGGCACGGATTGACCA
ATTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.755

99.065

0.453
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.393