Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB47_RS39640 Genome accession   NZ_CP108030
Coordinates   8747273..8747941 (+) Length   222 a.a.
NCBI ID   WP_327673010.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00311     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8742273..8752941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB47_RS39635 (OHB47_39655) - 8743030..8747010 (+) 3981 WP_327673009.1 glycosyl hydrolase -
  OHB47_RS39640 (OHB47_39660) vraR 8747273..8747941 (+) 669 WP_327673010.1 response regulator transcription factor Regulator
  OHB47_RS39645 (OHB47_39665) - 8747952..8749157 (+) 1206 WP_327673011.1 histidine kinase -
  OHB47_RS39650 (OHB47_39670) - 8749304..8749633 (+) 330 WP_327673012.1 hypothetical protein -
  OHB47_RS39655 (OHB47_39675) - 8749647..8750570 (+) 924 WP_327673013.1 ABC transporter ATP-binding protein -
  OHB47_RS39660 (OHB47_39680) - 8750570..8752186 (+) 1617 WP_327673014.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23907.82 Da        Isoelectric Point: 9.4527

>NTDB_id=651716 OHB47_RS39640 WP_327673010.1 8747273..8747941(+) (vraR) [Streptomyces sp. NBC_00311]
MTIRVLMVDDQEMVRRGMRRILESQPDIEVVGEAADGVAALEQARLLRPDVALMDVRMPRMDGLEVTRRLLEPASGLTTK
VVVVTTFDLDEYVYPALRYGASGFMLKRSGPTLLVEAVRAAMVGDSLISPSITVRLLRHVTGNGASAGAGSARPAVVEPL
TKREIEVAGKVAEGLTNADIAGEMFISPGTVKTHVASIQRKLGVRNRVGIAVRAWEMGYAPS

Nucleotide


Download         Length: 669 bp        

>NTDB_id=651716 OHB47_RS39640 WP_327673010.1 8747273..8747941(+) (vraR) [Streptomyces sp. NBC_00311]
GTGACGATTCGTGTGCTGATGGTGGATGACCAGGAGATGGTGCGCCGCGGAATGCGGCGGATCCTCGAGAGTCAACCGGA
CATCGAAGTGGTCGGTGAGGCCGCCGACGGAGTAGCCGCACTGGAACAGGCTCGCCTGCTCCGGCCCGATGTCGCTCTCA
TGGACGTGCGCATGCCCAGGATGGATGGACTCGAGGTCACCCGCAGGCTGCTCGAACCCGCCTCCGGGCTCACCACGAAG
GTCGTCGTTGTGACGACCTTCGACCTGGACGAGTATGTGTATCCGGCGCTGCGCTACGGCGCTTCAGGCTTCATGCTCAA
GCGCTCGGGGCCCACGCTGCTCGTGGAGGCGGTCCGTGCGGCCATGGTGGGGGACAGCCTCATCAGTCCCTCGATCACGG
TCCGGCTGCTGCGCCATGTCACAGGCAACGGCGCCTCCGCTGGGGCGGGTTCGGCGCGGCCGGCGGTGGTCGAACCGCTC
ACCAAGCGGGAGATCGAGGTCGCTGGAAAGGTGGCCGAGGGCCTGACCAACGCCGACATCGCCGGCGAGATGTTCATCTC
GCCGGGCACCGTCAAGACACATGTCGCGAGCATCCAGCGCAAGCTCGGTGTCCGCAACCGGGTCGGCATCGCCGTCCGGG
CCTGGGAGATGGGCTACGCCCCTTCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.963

97.297

0.369
  degU Bacillus subtilis subsp. subtilis str. 168

35.841

100

0.365