Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG878_RS35270 Genome accession   NZ_CP108023
Coordinates   7923809..7924474 (+) Length   221 a.a.
NCBI ID   WP_328890528.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00316     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7918809..7929474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG878_RS35250 (OG878_35305) - 7919609..7920823 (+) 1215 WP_328890525.1 geranylgeranyl reductase family protein -
  OG878_RS35255 (OG878_35310) - 7921018..7921467 (-) 450 WP_328890526.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OG878_RS35260 (OG878_35315) - 7921597..7922328 (+) 732 WP_328890527.1 TetR/AcrR family transcriptional regulator -
  OG878_RS35265 (OG878_35320) - 7922598..7923812 (+) 1215 WP_328891487.1 sensor histidine kinase -
  OG878_RS35270 (OG878_35325) vraR 7923809..7924474 (+) 666 WP_328890528.1 response regulator transcription factor Regulator
  OG878_RS35275 (OG878_35330) - 7924435..7924749 (-) 315 WP_328890529.1 DUF6332 family protein -
  OG878_RS35280 (OG878_35335) - 7924851..7926350 (-) 1500 WP_328890530.1 MFS transporter -
  OG878_RS35285 (OG878_35340) - 7926438..7926836 (+) 399 WP_328890531.1 MarR family transcriptional regulator -
  OG878_RS35290 (OG878_35345) - 7926890..7927651 (-) 762 WP_328890532.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG878_RS35295 (OG878_35350) - 7927673..7928041 (-) 369 WP_328890533.1 hypothetical protein -
  OG878_RS35300 (OG878_35355) - 7928163..7929380 (-) 1218 WP_328890534.1 MFS transporter -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24065.76 Da        Isoelectric Point: 4.6502

>NTDB_id=651624 OG878_RS35270 WP_328890528.1 7923809..7924474(+) (vraR) [Streptomyces sp. NBC_00316]
MIRVLLADDQLLVRAGFRALLDAQPDIEVAGEAADGEEAVRLVRELRPDTVLMDIRMPHLDGLAATRTITGDPELNDVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVGGDALLSPGVTRRLIAEFAARSKEPAAATELSELTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=651624 OG878_RS35270 WP_328890528.1 7923809..7924474(+) (vraR) [Streptomyces sp. NBC_00316]
GTGATTCGCGTACTGCTCGCCGATGACCAGCTTCTGGTCCGGGCCGGCTTCCGCGCCCTGCTGGACGCCCAGCCGGACAT
CGAGGTGGCGGGGGAGGCCGCCGACGGTGAGGAGGCCGTACGTCTGGTGCGCGAACTTCGGCCGGACACCGTGCTCATGG
ACATCCGGATGCCACATCTCGACGGCCTGGCCGCCACCCGCACCATCACCGGGGATCCGGAGCTGAACGACGTCAAGGTG
GTCATGCTCACCACCTTCGAGCTCGACGAATACGTTTTCGAGGCGATCCGTTCCGGGGCCTCCGGCTTTCTGGTCAAGGA
CACCGAGCCGGAGGAACTGCTGCGGGCGGTGCGGGCCGTGGTGGGCGGCGACGCCCTGCTCTCGCCAGGAGTGACCCGGC
GGCTGATCGCGGAGTTCGCGGCCCGCTCCAAGGAGCCCGCGGCTGCCACGGAGCTGAGCGAACTCACCGAACGGGAGAGG
GAAGTGATGGCGCTGGTCGGCATCGGGCTCTCCAACGAGGAGATCGCCCGCAGGCTCGTCGTCAGCCCGCTCACCGCGAA
GACCCACGTCAGCCGCACCATGGTGAAACTCGGCGCCCGCGACCGGGCCCAACTCGTCGTGCTCGCCTACGAGTCGGGGC
TCGTACGCCCCGGCTGGCTCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.07

97.285

0.38
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.371