Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG878_RS30360 Genome accession   NZ_CP108023
Coordinates   6818047..6818691 (+) Length   214 a.a.
NCBI ID   WP_328889726.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00316     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6813047..6823691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG878_RS30340 (OG878_30380) - 6813814..6814590 (-) 777 WP_328889722.1 transglycosylase SLT domain-containing protein -
  OG878_RS30345 (OG878_30385) - 6814890..6815993 (-) 1104 WP_328889723.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG878_RS30350 (OG878_30390) - 6815990..6816703 (-) 714 WP_328889724.1 SDR family oxidoreductase -
  OG878_RS30355 (OG878_30395) - 6816909..6818054 (+) 1146 WP_328889725.1 GAF domain-containing sensor histidine kinase -
  OG878_RS30360 (OG878_30400) vraR 6818047..6818691 (+) 645 WP_328889726.1 response regulator transcription factor Regulator
  OG878_RS30365 (OG878_30405) - 6818840..6819094 (+) 255 WP_328889727.1 chaplin family protein -
  OG878_RS30370 (OG878_30410) - 6819195..6819977 (-) 783 WP_328889728.1 hypothetical protein -
  OG878_RS30375 (OG878_30415) - 6820101..6820898 (+) 798 WP_277325436.1 ABC transporter ATP-binding protein -
  OG878_RS30380 (OG878_30420) - 6820952..6821380 (+) 429 WP_328889729.1 NfeD family protein -
  OG878_RS30385 (OG878_30425) - 6821524..6822453 (+) 930 WP_030920228.1 SPFH domain-containing protein -
  OG878_RS30390 (OG878_30430) - 6822563..6823069 (-) 507 WP_328889730.1 HNH endonuclease -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23037.32 Da        Isoelectric Point: 5.1573

>NTDB_id=651615 OG878_RS30360 WP_328889726.1 6818047..6818691(+) (vraR) [Streptomyces sp. NBC_00316]
MADRIIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEAADGAEGVARAEEMRPDVVLMDIKMPGTDGIEALRRLRELDNPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVYAGHVLLQPEVAGALLAQEDAGGGTGRGSTLTDREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=651615 OG878_RS30360 WP_328889726.1 6818047..6818691(+) (vraR) [Streptomyces sp. NBC_00316]
GTGGCTGACAGGATCATCAGGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGCGGTCTGCGTACGTTCCTGGAGAT
CCAGGACGACATAGAGGTGGTCGGCGAGGCGGCCGACGGCGCGGAGGGCGTGGCCAGGGCGGAGGAGATGCGCCCCGACG
TGGTCCTGATGGACATCAAGATGCCGGGCACGGACGGCATCGAGGCACTCCGCAGGCTCCGGGAGCTGGACAACCCCGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTGCCCGCCCTGCGCGCGGGCGCCTCCGGTTACGTGTA
CAAGGACGTCGACCCGGACGCACTGGCCGGCGCCATCCGCTCGGTGTACGCGGGCCATGTCCTGCTCCAGCCGGAGGTCG
CCGGAGCCCTGCTCGCCCAGGAGGACGCGGGCGGCGGTACGGGCCGGGGGAGCACCCTCACCGATCGCGAGCGGGAAGTG
CTGGGCCTGATCGCCGACGGCCGCTCCAACCGTGAGATCGCCCGGGCGCTGGTCCTCTCCGAGAAGACCGTCAAGACGCA
TGTCTCGAACATTCTGATGAAGCTGGATCTGGCGGACCGCACCCAGGCGGCCCTCTGGGCCGTCCGGCACGGGGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.411

96.729

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407