Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L2I54_RS21185 Genome accession   NZ_CP091476
Coordinates   4153757..4155496 (-) Length   579 a.a.
NCBI ID   WP_256627359.1    Uniprot ID   -
Organism   Bacillus cereus strain GSICC 30237     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4148757..4160496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I54_RS21155 (L2I54_21100) - 4148988..4149221 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  L2I54_RS21160 (L2I54_21105) - 4149271..4149999 (-) 729 WP_061457699.1 glycerophosphodiester phosphodiesterase -
  L2I54_RS21165 (L2I54_21110) - 4150050..4150196 (+) 147 WP_001247671.1 YycC family protein -
  L2I54_RS21170 (L2I54_21115) - 4150438..4151001 (-) 564 WP_061457700.1 PRK06770 family protein -
  L2I54_RS21175 (L2I54_21120) spo0A 4151255..4152049 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  L2I54_RS21180 (L2I54_21125) spoIVB 4152340..4153638 (-) 1299 WP_002000940.1 SpoIVB peptidase -
  L2I54_RS21185 (L2I54_21130) recN 4153757..4155496 (-) 1740 WP_256627359.1 DNA repair protein RecN Machinery gene
  L2I54_RS21190 (L2I54_21135) argR 4155761..4156210 (-) 450 WP_001032580.1 arginine repressor ArgR -
  L2I54_RS21195 (L2I54_21140) - 4156353..4157192 (-) 840 WP_000111875.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  L2I54_RS21200 (L2I54_21145) dxs 4157196..4159088 (-) 1893 WP_000366452.1 1-deoxy-D-xylulose-5-phosphate synthase -
  L2I54_RS21205 (L2I54_21150) ispA 4159390..4160280 (-) 891 WP_000150380.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65858.97 Da        Isoelectric Point: 4.8620

>NTDB_id=651599 L2I54_RS21185 WP_256627359.1 4153757..4155496(-) (recN) [Bacillus cereus strain GSICC 30237]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKHLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNVEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=651599 L2I54_RS21185 WP_256627359.1 4153757..4155496(-) (recN) [Bacillus cereus strain GSICC 30237]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGATCAGCAGAAT
TTGTTCGATATGGAACAGAGAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAGCAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAGGA
GAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAGGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACATTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACACCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGTAGAAGAGCCCCTTGTGGAAGGTGCGCCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCATCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCGGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601