Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG878_RS08695 Genome accession   NZ_CP108023
Coordinates   1971447..1972118 (-) Length   223 a.a.
NCBI ID   WP_328886242.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00316     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966447..1977118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG878_RS08680 (OG878_08700) - 1967618..1968457 (+) 840 WP_328886239.1 TIM barrel protein -
  OG878_RS08685 (OG878_08705) - 1968506..1969405 (+) 900 WP_328886240.1 2-hydroxy-3-oxopropionate reductase -
  OG878_RS08690 (OG878_08710) - 1969620..1971077 (+) 1458 WP_328886241.1 catalase -
  OG878_RS08695 (OG878_08715) vraR 1971447..1972118 (-) 672 WP_328886242.1 response regulator transcription factor Regulator
  OG878_RS08700 (OG878_08720) - 1972115..1973413 (-) 1299 WP_328886243.1 sensor histidine kinase -
  OG878_RS08705 (OG878_08725) - 1973612..1974775 (-) 1164 WP_328886244.1 acyltransferase -
  OG878_RS08710 (OG878_08730) - 1974768..1975757 (-) 990 WP_328886245.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23908.77 Da        Isoelectric Point: 4.9479

>NTDB_id=651567 OG878_RS08695 WP_328886242.1 1971447..1972118(-) (vraR) [Streptomyces sp. NBC_00316]
MTTIRVLIADDQMMVRQGFTVLLDAEPGIEVVGQAVDGLDAVAKVAELAPDVVLMDVRMPVLGGIEATRRITSPAGARVK
VLILTTFDLDEYVYEALRAGASSFLLKDASVEELAHAVRVVAAGDALLAPNITKRLIVEFSRMTAGPRAPLMDRVGDLTE
RETEVLSLIAQGLSNAEIASRLVVAEQTAKTHVSRILAKLGLRDRTQAAVFAYETGLVRPAGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=651567 OG878_RS08695 WP_328886242.1 1971447..1972118(-) (vraR) [Streptomyces sp. NBC_00316]
GTGACGACCATTCGTGTACTCATCGCCGACGACCAGATGATGGTTCGTCAGGGTTTCACGGTGCTGCTCGACGCCGAACC
CGGCATCGAGGTGGTCGGGCAGGCGGTGGACGGTCTCGACGCCGTCGCCAAGGTCGCCGAACTCGCCCCGGACGTCGTCC
TCATGGACGTCCGGATGCCTGTGCTCGGCGGTATCGAGGCGACCCGCCGCATCACGTCACCGGCCGGCGCCCGGGTCAAG
GTCCTCATCCTGACCACCTTCGATCTCGACGAGTACGTGTACGAGGCGCTGCGCGCCGGCGCGTCCAGCTTTCTCCTCAA
GGACGCATCGGTCGAGGAACTGGCCCATGCGGTCAGGGTGGTGGCGGCCGGTGACGCTTTGCTTGCCCCGAACATCACCA
AGCGGCTCATCGTCGAGTTCTCCCGGATGACCGCGGGACCCCGGGCCCCGCTCATGGATCGCGTCGGCGACCTGACGGAG
CGTGAGACCGAGGTGCTCTCCCTGATCGCGCAGGGCCTGTCGAACGCGGAGATAGCCTCGCGCCTGGTGGTGGCGGAGCA
GACGGCGAAGACCCATGTGAGCCGGATCCTCGCCAAGCTGGGGCTGCGCGACCGGACCCAGGCGGCGGTCTTCGCGTACG
AGACGGGCCTGGTCCGCCCGGCGGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.318

97.309

0.422
  degU Bacillus subtilis subsp. subtilis str. 168

40.175

100

0.413