Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG878_RS03305 Genome accession   NZ_CP108023
Coordinates   726037..726705 (-) Length   222 a.a.
NCBI ID   WP_328885327.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00316     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 721037..731705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG878_RS03280 (OG878_03285) - 721776..721988 (+) 213 WP_328885323.1 hypothetical protein -
  OG878_RS03285 (OG878_03290) - 722512..722649 (+) 138 WP_328885324.1 hypothetical protein -
  OG878_RS03290 (OG878_03295) - 722664..723476 (+) 813 WP_328885325.1 hypothetical protein -
  OG878_RS03295 (OG878_03300) - 723457..724848 (-) 1392 WP_328885326.1 ATP-binding protein -
  OG878_RS03300 (OG878_03305) - 724866..725536 (-) 671 Protein_657 response regulator transcription factor -
  OG878_RS03305 (OG878_03310) vraR 726037..726705 (-) 669 WP_328885327.1 response regulator transcription factor Regulator
  OG878_RS03310 (OG878_03315) - 726702..728018 (-) 1317 WP_328885328.1 sensor histidine kinase -
  OG878_RS03315 (OG878_03320) - 728023..728862 (-) 840 WP_328885329.1 ABC transporter permease -
  OG878_RS03320 (OG878_03325) - 728859..729806 (-) 948 WP_328885330.1 ATP-binding cassette domain-containing protein -
  OG878_RS03325 (OG878_03330) - 730009..730800 (+) 792 WP_328885331.1 hypothetical protein -
  OG878_RS03330 (OG878_03335) - 730823..730982 (-) 160 Protein_663 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23847.28 Da        Isoelectric Point: 4.9986

>NTDB_id=651556 OG878_RS03305 WP_328885327.1 726037..726705(-) (vraR) [Streptomyces sp. NBC_00316]
MTTVLIVDDQPLQRYGFRVLLDSIPETEVVGEATHGAEAVRMAAELRPDVVLMDVRMPGMDGIEATRRITAAGGRSSVLV
LTTFDLDEYVHAALRAGASGFLLKDARPEELLAGIRAVAAGDAVIAPALTRRLLDEYAQHVPARRSDSEEDPRLDALTER
EREILVAIGKGWTNGEIATRFVVSESTVKTHVGRVLAKIGARDRIQAVILAYDLGLAGPGAG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=651556 OG878_RS03305 WP_328885327.1 726037..726705(-) (vraR) [Streptomyces sp. NBC_00316]
GTGACCACGGTGCTCATCGTGGACGACCAGCCGCTCCAGCGCTACGGCTTTCGGGTGCTGCTCGACTCCATCCCCGAGAC
GGAGGTGGTCGGTGAGGCCACGCACGGAGCCGAGGCCGTCCGCATGGCCGCCGAGCTGCGTCCCGACGTCGTCCTGATGG
ACGTACGCATGCCCGGTATGGACGGCATCGAGGCCACCCGCCGGATCACCGCCGCCGGCGGCCGCTCCAGCGTTCTCGTG
CTGACCACTTTCGACCTCGACGAATATGTCCACGCCGCGCTACGGGCCGGAGCCAGCGGCTTCCTCCTCAAGGACGCGCG
CCCCGAGGAACTCCTCGCCGGCATCCGCGCCGTCGCCGCCGGCGACGCCGTCATCGCACCGGCTCTCACCCGCCGTCTCC
TGGACGAGTACGCCCAGCACGTGCCTGCTCGCCGGAGCGATTCCGAGGAGGACCCGAGACTGGATGCCCTCACCGAACGC
GAACGCGAGATCCTCGTCGCCATCGGCAAAGGCTGGACCAACGGTGAGATCGCCACCCGCTTCGTCGTGTCCGAGTCCAC
CGTCAAGACACACGTGGGCCGTGTCCTGGCCAAGATCGGCGCCCGCGACCGCATCCAGGCCGTGATCCTCGCTTATGACC
TCGGGCTCGCCGGCCCCGGTGCCGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.498

95.946

0.369
  degU Bacillus subtilis subsp. subtilis str. 168

36.199

99.55

0.36