Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG905_RS38630 Genome accession   NZ_CP108019
Coordinates   8495233..8495913 (+) Length   226 a.a.
NCBI ID   WP_328681897.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8490233..8500913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS38610 (OG905_38650) - 8490323..8491177 (-) 855 Protein_7634 IS3 family transposase -
  OG905_RS38615 (OG905_38655) - 8491234..8491539 (-) 306 WP_267002932.1 transposase -
  OG905_RS38620 (OG905_38660) - 8491804..8492781 (+) 978 WP_328681894.1 alpha/beta hydrolase -
  OG905_RS38625 (OG905_38665) - 8492774..8495236 (+) 2463 WP_328681895.1 histidine kinase -
  OG905_RS38630 (OG905_38670) vraR 8495233..8495913 (+) 681 WP_328681897.1 response regulator transcription factor Regulator
  OG905_RS38635 (OG905_38675) - 8496160..8496309 (+) 150 WP_328681899.1 hypothetical protein -
  OG905_RS38640 (OG905_38680) - 8496345..8496734 (-) 390 WP_328681901.1 hypothetical protein -
  OG905_RS38645 (OG905_38685) - 8496986..8497357 (+) 372 WP_328681903.1 prolyl oligopeptidase family serine peptidase -
  OG905_RS38650 (OG905_38690) - 8497983..8499029 (+) 1047 WP_328681905.1 alpha/beta hydrolase -
  OG905_RS38655 (OG905_38695) - 8499311..8500519 (+) 1209 WP_328681907.1 glycosyltransferase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24319.97 Da        Isoelectric Point: 5.1162

>NTDB_id=651552 OG905_RS38630 WP_328681897.1 8495233..8495913(+) (vraR) [Streptomyces sp. NBC_00322]
MTIRVVIADDQAMVREAFSVLLNAQPDIEVITTAVDGLEAVAKAEELRPDVIVMDIRMPGLNGIDATRQITAQADLPTKI
LVLTTFNLDEYVYEALRAGASGFLLKDASGVQLAEAVRTVSAGEALLSPEITKRLITEFSRLSSSSSAKPPAHVRVDGLT
NRETEVLTLVAQGLSNAEIAGKLVVAEQTIKTHMGSILHKLQLRDRTQAAVFAYETGLVARGRTNL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=651552 OG905_RS38630 WP_328681897.1 8495233..8495913(+) (vraR) [Streptomyces sp. NBC_00322]
ATGACGATTCGAGTGGTGATCGCCGACGACCAGGCGATGGTCCGCGAAGCCTTCTCGGTGCTTCTCAACGCCCAGCCCGA
CATCGAAGTGATCACGACCGCCGTGGACGGCCTGGAAGCCGTCGCCAAGGCCGAAGAACTACGCCCCGACGTGATCGTCA
TGGACATCCGGATGCCCGGACTGAACGGCATCGACGCCACTCGCCAGATCACCGCGCAGGCCGACCTGCCCACCAAGATC
CTGGTCCTGACCACCTTCAACCTCGACGAGTACGTGTACGAAGCGCTGCGTGCCGGCGCCAGCGGATTTCTCCTCAAAGA
CGCCTCGGGAGTCCAACTGGCCGAAGCCGTACGCACCGTGTCCGCCGGCGAAGCTCTGCTGTCTCCGGAGATCACCAAGC
GGCTCATCACCGAGTTCTCCCGCCTGAGCAGCTCGAGCTCGGCGAAGCCACCCGCCCACGTACGGGTCGACGGGCTCACC
AACCGCGAAACCGAGGTACTGACGCTCGTCGCCCAAGGGCTTTCCAACGCGGAGATCGCCGGCAAGCTGGTCGTCGCCGA
ACAGACCATCAAGACCCACATGGGCAGCATCCTGCACAAGCTCCAGCTGCGAGACCGCACCCAGGCAGCCGTCTTCGCCT
ACGAGACGGGCCTGGTCGCCCGAGGCCGCACCAACCTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-213)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.273

97.345

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

38.839

99.115

0.385