Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG905_RS33440 Genome accession   NZ_CP108019
Coordinates   7311858..7312478 (-) Length   206 a.a.
NCBI ID   WP_328680084.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7306858..7317478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS33420 (OG905_33460) - 7307219..7308448 (-) 1230 WP_328680079.1 DUF349 domain-containing protein -
  OG905_RS33425 (OG905_33465) - 7308626..7309417 (-) 792 WP_328680082.1 peptidylprolyl isomerase -
  OG905_RS33430 (OG905_33470) - 7309551..7310288 (+) 738 WP_328682741.1 MBL fold metallo-hydrolase -
  OG905_RS33435 (OG905_33475) hisS 7310300..7311562 (+) 1263 WP_328680083.1 histidine--tRNA ligase -
  OG905_RS33440 (OG905_33480) vraR 7311858..7312478 (-) 621 WP_328680084.1 response regulator transcription factor Regulator
  OG905_RS33445 (OG905_33485) - 7312475..7313716 (-) 1242 WP_328680085.1 sensor histidine kinase -
  OG905_RS33450 (OG905_33490) - 7313674..7314522 (-) 849 WP_328680086.1 ABC transporter permease -
  OG905_RS33455 (OG905_33495) - 7314519..7315373 (-) 855 WP_328680088.1 ABC transporter ATP-binding protein -
  OG905_RS33460 (OG905_33500) - 7315510..7316142 (+) 633 WP_328680090.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22030.43 Da        Isoelectric Point: 6.4894

>NTDB_id=651546 OG905_RS33440 WP_328680084.1 7311858..7312478(-) (vraR) [Streptomyces sp. NBC_00322]
MIRILLADDHPVVREGLRGMLGAEPDLTVVGEASSGPQAEALSAELRPDIVLMDLRMPGGGGVESINRMRAAGLPCRVIV
LTTYETDTDILRAVEAGAAGYLLKDLARGELADAVRAAARGETVLAPSVAARLVDQLRRQPERPRLSERETAVLRLVAEG
CTNAEVGRRLYIGESTVKTHLLRIFGKLGVDDRTAAVTSAMRNGLL

Nucleotide


Download         Length: 621 bp        

>NTDB_id=651546 OG905_RS33440 WP_328680084.1 7311858..7312478(-) (vraR) [Streptomyces sp. NBC_00322]
GTGATCCGCATTCTGCTCGCCGACGACCATCCCGTCGTACGGGAGGGCCTGCGCGGGATGCTCGGCGCCGAGCCCGATCT
GACCGTGGTCGGCGAGGCGTCGAGCGGACCGCAGGCGGAGGCGCTGAGCGCCGAACTCCGGCCGGACATCGTGCTGATGG
ACCTGCGGATGCCGGGCGGCGGGGGCGTCGAGTCGATCAACCGGATGCGCGCGGCCGGACTGCCCTGCCGGGTGATCGTG
CTGACGACGTACGAGACGGACACGGACATCCTGCGGGCCGTGGAGGCGGGGGCGGCGGGCTATCTGCTCAAGGATCTGGC
CCGCGGCGAACTGGCCGACGCGGTACGGGCGGCGGCCCGCGGCGAGACGGTACTGGCACCTTCGGTGGCGGCGCGCCTGG
TCGACCAGCTGCGCCGGCAGCCGGAGCGGCCGCGGCTGTCGGAACGCGAGACGGCGGTGCTGCGGCTGGTGGCGGAGGGG
TGCACGAACGCGGAGGTCGGGCGTCGGCTGTACATCGGGGAGTCCACGGTGAAGACGCACCTGCTGCGGATCTTCGGGAA
GCTGGGGGTGGACGACCGCACGGCGGCGGTGACGAGCGCGATGCGGAACGGGTTGCTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(146-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.835

100

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

35.426

100

0.383