Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG905_RS29280 Genome accession   NZ_CP108019
Coordinates   6415117..6415794 (+) Length   225 a.a.
NCBI ID   WP_328678570.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6410117..6420794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS29270 (OG905_29300) - 6411435..6413597 (-) 2163 WP_328678568.1 MMPL family transporter -
  OG905_RS29275 (OG905_29305) - 6413852..6415120 (+) 1269 WP_328678569.1 sensor histidine kinase -
  OG905_RS29280 (OG905_29310) vraR 6415117..6415794 (+) 678 WP_328678570.1 response regulator transcription factor Regulator
  OG905_RS29285 (OG905_29315) - 6415812..6416255 (-) 444 WP_328678571.1 VOC family protein -
  OG905_RS29290 (OG905_29320) - 6416271..6416519 (-) 249 WP_328678572.1 DUF397 domain-containing protein -
  OG905_RS29295 (OG905_29325) - 6416516..6417352 (-) 837 WP_328678573.1 helix-turn-helix transcriptional regulator -
  OG905_RS29300 (OG905_29330) - 6417534..6418475 (-) 942 WP_328678574.1 glycoside hydrolase family 16 protein -
  OG905_RS29305 (OG905_29335) - 6418527..6420629 (-) 2103 WP_328678575.1 ATP-binding protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24634.36 Da        Isoelectric Point: 5.3797

>NTDB_id=651536 OG905_RS29280 WP_328678570.1 6415117..6415794(+) (vraR) [Streptomyces sp. NBC_00322]
MSIRVVVVDDQALVRRGFVMILRVHDDIEVMAEAGTGLEAVDAARRHRPDVILMDIRMPGMDGIEATSRILREADWDVRV
LILTTFDPDEYVYKALRAGASAFVLKDIPPEQLATAVRTVAEGGALLAPSITRRLIDQFAERRVVNTTVAGRLERLTERE
LEIVVAAARGASNSEIAAQLFIGPATVKSHVSSILTKLGLRDRTQIVIFAYESGLVEAGDHDVGH

Nucleotide


Download         Length: 678 bp        

>NTDB_id=651536 OG905_RS29280 WP_328678570.1 6415117..6415794(+) (vraR) [Streptomyces sp. NBC_00322]
GTGAGCATCCGTGTCGTTGTCGTGGATGACCAGGCGCTGGTCCGCCGGGGCTTCGTCATGATTCTGAGGGTCCATGACGA
CATTGAGGTCATGGCCGAGGCCGGGACCGGACTTGAGGCCGTCGACGCGGCACGCAGGCATCGTCCGGACGTGATCCTCA
TGGACATCCGCATGCCGGGCATGGACGGCATCGAGGCAACCTCCCGGATTCTGCGGGAGGCGGACTGGGACGTGCGGGTC
CTGATCCTGACCACGTTCGATCCGGACGAGTACGTCTACAAGGCGCTGCGTGCCGGTGCCAGCGCCTTCGTGCTCAAGGA
CATTCCCCCCGAGCAGCTCGCCACCGCCGTGCGCACCGTGGCCGAGGGCGGGGCGCTGCTGGCCCCTTCGATCACCCGGC
GCCTCATCGACCAGTTCGCGGAGCGACGTGTCGTCAACACCACCGTGGCGGGCCGCCTGGAGCGACTCACCGAGCGCGAA
CTCGAGATCGTGGTCGCCGCCGCGCGGGGCGCGAGCAACTCGGAGATCGCCGCCCAGCTCTTCATCGGGCCCGCCACCGT
CAAATCGCACGTGTCGAGCATCCTCACCAAACTCGGTCTGCGTGACCGCACCCAGATCGTGATCTTCGCCTACGAGAGCG
GACTCGTGGAAGCGGGCGACCACGACGTCGGTCACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.014

96.444

0.396
  degU Bacillus subtilis subsp. subtilis str. 168

38.596

100

0.391