Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG905_RS19075 Genome accession   NZ_CP108019
Coordinates   4209562..4210161 (-) Length   199 a.a.
NCBI ID   WP_142214508.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4204562..4215161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS19055 (OG905_19060) - 4205267..4205929 (-) 663 WP_266479952.1 SigE family RNA polymerase sigma factor -
  OG905_RS19060 (OG905_19065) - 4206270..4207340 (-) 1071 WP_328673510.1 aspartate-semialdehyde dehydrogenase -
  OG905_RS19065 (OG905_19070) - 4207337..4208608 (-) 1272 WP_266479957.1 aspartate kinase -
  OG905_RS19070 (OG905_19075) - 4208910..4209569 (-) 660 WP_328673513.1 DUF5063 domain-containing protein -
  OG905_RS19075 (OG905_19080) recR 4209562..4210161 (-) 600 WP_142214508.1 recombination mediator RecR Machinery gene
  OG905_RS19080 (OG905_19085) - 4210217..4210552 (-) 336 WP_328682451.1 YbaB/EbfC family nucleoid-associated protein -
  OG905_RS19085 (OG905_19090) - 4210834..4211568 (+) 735 WP_328673516.1 SLATT domain-containing protein -
  OG905_RS19090 (OG905_19095) - 4211900..4212841 (-) 942 WP_328673518.1 class I SAM-dependent methyltransferase -
  OG905_RS19095 (OG905_19100) - 4212915..4213565 (-) 651 WP_328673520.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21907.23 Da        Isoelectric Point: 5.3854

>NTDB_id=651516 OG905_RS19075 WP_142214508.1 4209562..4210161(-) (recR) [Streptomyces sp. NBC_00322]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEQCNICRDPRRDHSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTITELIIATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=651516 OG905_RS19075 WP_142214508.1 4209562..4210161(-) (recR) [Streptomyces sp. NBC_00322]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACCGACGTACGCCGGCTCGCCCACGCGCTGCTCGAGGTGAAGGACAAGGTCC
GCTTCTGTGCGGTGTGCGGCAATGTCGCGCAGCAGGAACAGTGCAACATCTGCCGTGACCCGCGCCGCGACCACTCGGTC
ATCTGCGTGGTGGAGGAACCGAAGGACGTTGTCGCGATCGAGCGGACCCGGGAGTTCCGGGGCCGCTACCACGTGCTCGG
CGGGGCCATCAGCCCCATCGAGGGCGTCGGCCCCGACGACCTGCGGATCCGTGAGCTGCTGGCCCGCCTCGCGGACGGCA
CGATCACGGAGCTGATCATCGCCACGGATCCCAATCTCGAGGGCGAAGCCACCGCCACGTACCTGGCGCGCATGATCAAG
CCGATGGGCCTGAAGGTCACAAGACTGGCCAGCGGTCTGCCCGTGGGGGGAGACTTGGAATACGCCGACGAGGTCACGCT
GGGGCGTGCCTTCGAGGGGAGACGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457