Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG905_RS18110 Genome accession   NZ_CP108019
Coordinates   4015640..4017073 (+) Length   477 a.a.
NCBI ID   WP_328672910.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4010640..4022073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS18090 (OG905_18095) - 4010911..4011741 (-) 831 WP_328672901.1 sugar phosphate isomerase/epimerase -
  OG905_RS18095 (OG905_18100) - 4011765..4012697 (-) 933 WP_328672903.1 Ppx/GppA phosphatase family protein -
  OG905_RS18100 (OG905_18105) - 4012738..4013589 (+) 852 WP_328672905.1 hypothetical protein -
  OG905_RS18105 (OG905_18110) - 4013739..4015457 (-) 1719 WP_328672908.1 hypothetical protein -
  OG905_RS18110 (OG905_18115) radA/sms 4015640..4017073 (+) 1434 WP_328672910.1 DNA repair protein RadA Machinery gene
  OG905_RS18115 (OG905_18120) disA 4017175..4018299 (+) 1125 WP_266479620.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG905_RS18120 (OG905_18125) - 4018393..4019202 (-) 810 WP_328672914.1 hypothetical protein -
  OG905_RS18125 (OG905_18130) - 4019384..4020292 (+) 909 WP_328672917.1 A/G-specific adenine glycosylase -
  OG905_RS18130 (OG905_18135) - 4020557..4021129 (+) 573 WP_328672918.1 SigE family RNA polymerase sigma factor -
  OG905_RS18135 (OG905_18140) - 4021117..4021788 (+) 672 WP_328672921.1 hypothetical protein -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 50029.07 Da        Isoelectric Point: 7.7379

>NTDB_id=651510 OG905_RS18110 WP_328672910.1 4015640..4017073(+) (radA/sms) [Streptomyces sp. NBC_00322]
MAARTKSAKDRPSYRCTDCGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGQVDGRQATARSTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHPTLYVTGEESASQVRLRADRINALHDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPAGMKVTEVADMGDALRVLPRGRRTAPDNGSEGRPERASERGQ

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=651510 OG905_RS18110 WP_328672910.1 4015640..4017073(+) (radA/sms) [Streptomyces sp. NBC_00322]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGACTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCTGAATGCCAGGCCTGGGGCACTGTCGAGGAGTACGGCGCACCCGCTGTCCGTACGACCGCCGCCGGGC
GCGTCTCCACCGCCGCGCTCCCCATCGGCCAGGTCGACGGCCGGCAGGCGACCGCCCGCTCCACCGGTGTGGCCGAGCTG
GACCGCGTCCTCGGCGGCGGCCTGGTGCCGGGAGCCGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCCACACT
GCTCCTCGACGTAGCCGCCAAGGCCGCGAGCGACGATCACCCCACCCTGTACGTCACCGGCGAGGAGTCCGCGAGCCAGG
TCCGCCTGCGAGCCGACCGGATCAACGCGCTGCACGACCACCTGTATCTCGCCGCCGAGACCGATCTCTCCGCCGTCCTC
GGCCACTTGGACGCGGTCAAGCCCTCGCTGCTGATCCTCGACTCCGTACAGACCGTCGCATCGCCCGAGATCGACGGGGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TTGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGACCGCGGCTCCTCGAACATCTGGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGCCTCCGTCTCGTACGAGGCGTCAAGAACCGCTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGCCTCTTCCTCACCCGCCGCGCGGAGGCCGTCCCGG
GCACCTGCCTGACGGTCACCCTCGAAGGCCGCCGCCCTCTCGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCGCCCCGGCGCACGACCTCGGGTCTGGAGACCTCACGTGTCTCGATGATGCTGGCCGTACTGGAACAGCGCGGCCG
GATCACCGCGCTGGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCGGCGGACCTCG
CGATCGCGCTCGCCCTGGCGTCGGCGGCGAGCGACACCCCGCTGCCCAAGAATCTGGTCGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGAAGGGTGACGGGCGTCCAGCGAAGGCTCGCCGAGGCGCACCGGCTCGGCTTCACGCATGCCCTTGT
CCCCACCGATCCGGGCAAGATCCCTGCGGGCATGAAGGTCACGGAAGTGGCCGACATGGGGGACGCTCTCAGAGTGCTCC
CGCGCGGTCGCCGGACGGCTCCCGACAACGGTTCCGAAGGGCGTCCCGAAAGGGCTTCCGAAAGGGGTCAGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

94.969

0.417
  radA Streptococcus pneumoniae Rx1

42.699

94.759

0.405
  radA Streptococcus pneumoniae D39

42.699

94.759

0.405
  radA Streptococcus pneumoniae R6

42.699

94.759

0.405
  radA Streptococcus pneumoniae TIGR4

42.699

94.759

0.405
  radA Streptococcus mitis SK321

44.159

89.727

0.396
  radA Streptococcus mitis NCTC 12261

44.159

89.727

0.396