Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   GAVG_RS05905 Genome accession   NZ_AP012332
Coordinates   1522706..1523407 (+) Length   233 a.a.
NCBI ID   WP_009994318.1    Uniprot ID   -
Organism   Gardnerella vaginalis ATCC 14018 = JCM 11026     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1517706..1528407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAVG_RS05880 (GAVG_1153) - 1517817..1519553 (-) 1737 WP_009994324.1 FTR1 family protein -
  GAVG_RS05885 (GAVG_1154) - 1519800..1520060 (-) 261 WP_116285252.1 type I restriction endonuclease subunit R, EcoR124 family -
  GAVG_RS05890 (GAVG_1156) - 1520302..1521066 (-) 765 WP_004114222.1 ABC transporter permease -
  GAVG_RS05895 (GAVG_1157) - 1521080..1521805 (-) 726 WP_009994320.1 ABC transporter permease -
  GAVG_RS05900 (GAVG_1158) - 1521802..1522566 (-) 765 WP_004138603.1 ABC transporter ATP-binding protein -
  GAVG_RS05905 (GAVG_1159) scnR 1522706..1523407 (+) 702 WP_009994318.1 response regulator transcription factor Regulator
  GAVG_RS05910 (GAVG_1160) - 1523414..1524823 (+) 1410 WP_013399787.1 sensor histidine kinase KdpD -
  GAVG_RS05915 (GAVG_1161) - 1525141..1526181 (-) 1041 WP_009994313.1 FAD:protein FMN transferase -
  GAVG_RS05920 (GAVG_1162) - 1526205..1527455 (-) 1251 WP_004138600.1 Fic family protein -
  GAVG_RS07520 (GAVG_1163) - 1527896..1528060 (+) 165 Protein_1152 ATPase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26456.61 Da        Isoelectric Point: 4.8694

>NTDB_id=65143 GAVG_RS05905 WP_009994318.1 1522706..1523407(+) (scnR) [Gardnerella vaginalis ATCC 14018 = JCM 11026]
MNLNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIQLT
AKEYDLLSALYRNAGCIVTIDALCEATWGANPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=65143 GAVG_RS05905 WP_009994318.1 1522706..1523407(+) (scnR) [Gardnerella vaginalis ATCC 14018 = JCM 11026]
ATGAATCTGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGATGATGAGCAGGAACTTCTAGATATGGTTGTGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAGTTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCCTCTGCCCAAGTAATAAAAAATAACGAACATATTCAACTCACA
GCCAAAGAATATGATTTACTTTCTGCACTTTATAGAAATGCTGGATGCATTGTAACAATTGACGCATTATGTGAAGCTAC
ATGGGGAGCTAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATAAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.915

95.708

0.506

Multiple sequence alignment