Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG485_RS01560 Genome accession   NZ_CP108013
Coordinates   388466..389158 (-) Length   230 a.a.
NCBI ID   WP_328663655.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00328     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 383466..394158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG485_RS01535 (OG485_01540) - 383828..384475 (+) 648 WP_328663647.1 tetratricopeptide repeat protein -
  OG485_RS01540 (OG485_01545) - 384498..385209 (-) 712 Protein_307 IS5 family transposase -
  OG485_RS01545 (OG485_01550) - 385487..386506 (-) 1020 WP_328663649.1 NADPH:quinone reductase -
  OG485_RS01550 (OG485_01555) - 386597..387490 (-) 894 WP_328663651.1 aldo/keto reductase -
  OG485_RS01555 (OG485_01560) - 387487..388044 (-) 558 WP_328663653.1 TetR family transcriptional regulator -
  OG485_RS01560 (OG485_01565) vraR 388466..389158 (-) 693 WP_328663655.1 response regulator transcription factor Regulator
  OG485_RS01565 (OG485_01570) - 389163..390392 (-) 1230 WP_328663658.1 histidine kinase -
  OG485_RS01570 (OG485_01575) - 390421..391299 (-) 879 WP_328663659.1 CPBP family intramembrane glutamic endopeptidase -
  OG485_RS01575 (OG485_01580) - 391725..392328 (-) 604 Protein_314 IS5 family transposase -
  OG485_RS01580 (OG485_01585) - 392469..392864 (+) 396 WP_328663662.1 VOC family protein -
  OG485_RS01585 (OG485_01590) - 392949..393284 (+) 336 Protein_316 transposase -
  OG485_RS01590 (OG485_01595) - 393401..394045 (-) 645 WP_328663663.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24838.59 Da        Isoelectric Point: 5.3603

>NTDB_id=651396 OG485_RS01560 WP_328663655.1 388466..389158(-) (vraR) [Streptomyces sp. NBC_00328]
MSDAPQTVRVLVCDDQELVRTGYVTIFSAQPDIEVVGEAENGHAAVEAARRLRPDVVVMDIRMPLLDGIQATRQLAGPDA
QFPPKVLVVTTFNVDAYVYDALRAGASGFLLKDAPPAELVNGIRTVARGEALLAPAVTRDLIGHFAGHLRPADTSRQARE
DLVRALTPRELDVLRQIAEGLSNAEIATALFITPETVKTYVSRILAKLGLRDRVQAVVLAYRVGLIPAAD

Nucleotide


Download         Length: 693 bp        

>NTDB_id=651396 OG485_RS01560 WP_328663655.1 388466..389158(-) (vraR) [Streptomyces sp. NBC_00328]
GTGAGCGATGCGCCGCAAACCGTCCGTGTACTCGTCTGCGACGACCAGGAACTGGTGCGGACCGGCTACGTCACCATCTT
CTCCGCGCAGCCCGACATCGAGGTCGTCGGGGAGGCCGAGAACGGGCACGCGGCAGTGGAAGCCGCACGGCGGCTGCGGC
CCGACGTGGTGGTGATGGACATCCGGATGCCTCTGCTCGACGGCATCCAGGCGACCCGGCAACTGGCCGGTCCCGATGCC
CAGTTCCCGCCGAAGGTGCTGGTCGTCACCACGTTCAACGTCGATGCCTACGTCTACGACGCGCTGCGGGCCGGAGCCAG
CGGCTTCCTCCTCAAGGACGCGCCTCCCGCGGAGCTGGTGAACGGGATCCGTACGGTCGCCCGGGGCGAGGCCCTGCTGG
CGCCCGCCGTCACCCGCGACCTCATAGGTCACTTCGCCGGACACCTGCGGCCGGCCGACACCTCCCGGCAGGCCAGGGAA
GACCTCGTACGCGCGCTGACCCCCCGCGAGCTCGACGTGCTCCGGCAGATCGCCGAGGGGCTGTCGAACGCGGAGATCGC
CACGGCGCTGTTCATCACCCCCGAGACGGTCAAGACCTACGTTTCGCGGATCCTGGCCAAACTCGGCCTGCGCGACCGGG
TCCAGGCGGTCGTCCTCGCCTACCGGGTCGGGCTGATCCCGGCGGCCGACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-123)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.909

95.652

0.391
  degU Bacillus subtilis subsp. subtilis str. 168

36.564

98.696

0.361