Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB16_RS29395 Genome accession   NZ_CP108008
Coordinates   6389136..6389807 (-) Length   223 a.a.
NCBI ID   WP_328661539.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00334     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6384136..6394807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS29380 (OHB16_29375) - 6385801..6386154 (+) 354 WP_328660078.1 hypothetical protein -
  OHB16_RS29385 (OHB16_29380) - 6386554..6387084 (+) 531 WP_328660079.1 GNAT family N-acetyltransferase -
  OHB16_RS29390 (OHB16_29385) - 6387444..6387911 (-) 468 WP_078884544.1 cupin domain-containing protein -
  OHB16_RS29395 (OHB16_29390) vraR 6389136..6389807 (-) 672 WP_328661539.1 response regulator transcription factor Regulator
  OHB16_RS29400 (OHB16_29395) - 6389949..6392012 (-) 2064 WP_328660082.1 histidine kinase -
  OHB16_RS29405 (OHB16_29400) - 6392343..6393914 (+) 1572 WP_328660084.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23225.84 Da        Isoelectric Point: 4.6212

>NTDB_id=651387 OHB16_RS29395 WP_328661539.1 6389136..6389807(-) (vraR) [Streptomyces sp. NBC_00334]
MGIRVLVVDDQAIVRAGFVAILTAEADMTVVGEAADGDAAVAMSAQLAPDLVLMDIRMPGMDGLTATRLITNHGSGARVL
VLTTFDLDAYVYEALRAGASGFLLKDSEPEDLLAAIRVVASGDGVLAPAVTGRLIAAFARGASFAPEITRALDSLTNRER
EILVLVATGLSNAEIGARLEVAVGTVKVHVSSVLNKLGLRDRVQATIFAYESGLVRPSVTPTL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=651387 OHB16_RS29395 WP_328661539.1 6389136..6389807(-) (vraR) [Streptomyces sp. NBC_00334]
ATCGGTATCCGTGTGCTGGTCGTGGACGATCAGGCGATCGTCCGCGCGGGTTTCGTGGCGATCCTGACGGCCGAGGCCGA
CATGACCGTGGTCGGCGAGGCAGCGGACGGTGACGCGGCCGTGGCGATGTCGGCACAGCTCGCGCCCGACCTGGTGCTCA
TGGACATCCGCATGCCGGGTATGGACGGACTGACGGCGACCCGGCTGATCACCAATCACGGTAGCGGCGCCCGGGTTCTG
GTGCTGACCACGTTCGACCTCGACGCCTATGTCTACGAGGCTCTGCGCGCCGGGGCCTCCGGCTTTCTGCTCAAGGATTC
CGAGCCGGAGGACCTCCTGGCCGCGATACGGGTGGTCGCCTCCGGTGACGGCGTCCTCGCGCCCGCGGTCACGGGACGTC
TGATAGCAGCCTTCGCTCGGGGGGCCTCCTTCGCTCCGGAGATCACGAGGGCGCTGGACAGCCTCACCAACCGCGAACGC
GAGATCCTCGTCCTCGTCGCCACGGGCCTGAGCAACGCGGAGATCGGCGCGCGTCTGGAAGTAGCCGTGGGAACGGTGAA
GGTGCACGTGAGCTCAGTGCTCAACAAGCTGGGCCTACGGGATCGTGTGCAGGCGACCATTTTCGCCTACGAGAGTGGGC
TGGTCCGCCCGTCGGTGACGCCGACTCTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.815

96.861

0.386
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.381