Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB16_RS24695 Genome accession   NZ_CP108008
Coordinates   5303945..5304586 (-) Length   213 a.a.
NCBI ID   WP_271320398.1    Uniprot ID   A0ABV9WQB1
Organism   Streptomyces sp. NBC_00334     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5298945..5309586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS24675 (OHB16_24680) atpD 5299368..5300804 (+) 1437 WP_271320395.1 F0F1 ATP synthase subunit beta -
  OHB16_RS24680 (OHB16_24685) - 5300936..5301310 (+) 375 WP_271320396.1 F0F1 ATP synthase subunit epsilon -
  OHB16_RS24685 (OHB16_24690) - 5301453..5301899 (+) 447 WP_007387649.1 DUF2550 domain-containing protein -
  OHB16_RS24690 (OHB16_24695) - 5301963..5303798 (-) 1836 WP_328659320.1 glycoside hydrolase family 18 chitinase -
  OHB16_RS24695 (OHB16_24700) vraR 5303945..5304586 (-) 642 WP_271320398.1 response regulator transcription factor Regulator
  OHB16_RS24700 (OHB16_24705) - 5304583..5305779 (-) 1197 WP_328659321.1 histidine kinase -
  OHB16_RS24705 (OHB16_24710) - 5305932..5306516 (+) 585 WP_271320400.1 hypothetical protein -
  OHB16_RS24710 (OHB16_24715) - 5306513..5306710 (+) 198 WP_271320401.1 DUF5708 family protein -
  OHB16_RS24715 (OHB16_24720) - 5306826..5307398 (-) 573 WP_328659322.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OHB16_RS24720 (OHB16_24725) - 5307412..5308161 (-) 750 WP_328659324.1 ABC transporter permease -
  OHB16_RS24725 (OHB16_24730) - 5308179..5308961 (-) 783 WP_328659326.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22573.19 Da        Isoelectric Point: 4.7252

>NTDB_id=651367 OHB16_RS24695 WP_271320398.1 5303945..5304586(-) (vraR) [Streptomyces sp. NBC_00334]
MIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAADGEQAVSLARELRPDLVLMDVQMPRLDGVSATRIVVGEQLADVLVL
TTFDLDEYVFGALRAGAAGFLLKNTDAKDLLTAVRTVAGGEGIVAPAVTRRLIAEFAAKPMREPTADPAVLRELTRRERE
VLSCLGEGLSNAAVAERLDMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELGI

Nucleotide


Download         Length: 642 bp        

>NTDB_id=651367 OHB16_RS24695 WP_271320398.1 5303945..5304586(-) (vraR) [Streptomyces sp. NBC_00334]
ATGATCCGCGTCCTCGTCGCCGAGGACCAGTCCGCCGTCCGCGCGGGGCTGGTGCTGATCCTGGGCAGCGCACCGGACAT
CGAGGTGGTGGGCGAGGCAGCCGATGGCGAGCAGGCGGTGTCGCTGGCCCGGGAGCTGCGTCCCGACCTGGTGCTGATGG
ACGTGCAGATGCCGCGCCTGGACGGCGTGTCGGCGACCCGGATCGTGGTCGGCGAGCAGCTCGCCGACGTCCTGGTGCTG
ACCACCTTCGACCTCGACGAGTACGTGTTCGGGGCGCTGCGGGCGGGGGCCGCCGGGTTCCTGCTGAAGAACACCGACGC
CAAGGACCTGCTCACGGCCGTGCGCACGGTGGCCGGCGGCGAGGGCATCGTGGCCCCGGCCGTCACCCGGCGGCTGATCG
CCGAGTTCGCCGCGAAGCCGATGCGCGAGCCGACCGCGGACCCGGCGGTGCTGCGGGAGCTGACCCGGCGTGAGCGCGAG
GTGCTGTCCTGTCTCGGCGAGGGACTGTCCAACGCGGCGGTCGCCGAGCGTCTCGACATGGCGGAGGCCACGGTGAAGAC
GCACGTCAGCCGACTGCTGGGGAAGCTGGGGCTGCGCAGCCGGGTCCAAGCGGCGGTGCTGGCACAGGAGTTGGGTATCT
AG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.429

98.592

0.408
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.404