Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBSC_RS00880 Genome accession   NZ_AP012331
Coordinates   227705..229576 (+) Length   623 a.a.
NCBI ID   WP_033516811.1    Uniprot ID   A0A087DDL1
Organism   Bifidobacterium scardovii JCM 12489 = DSM 13734 strain JCM 12489     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 222705..234576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBSC_RS00855 (BBSC_0175) - 222823..223716 (-) 894 WP_081892967.1 thiazole synthase -
  BBSC_RS00860 (BBSC_0176) thiF 223769..224494 (-) 726 WP_033516817.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BBSC_RS00865 (BBSC_0177) thiS 224500..224694 (-) 195 WP_033516815.1 sulfur carrier protein ThiS -
  BBSC_RS00870 (BBSC_0178) - 225269..226255 (+) 987 WP_046726158.1 aldo/keto reductase -
  BBSC_RS13830 - 226268..226408 (-) 141 WP_169742217.1 hypothetical protein -
  BBSC_RS00875 (BBSC_0180) - 226906..227433 (+) 528 WP_033516813.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBSC_RS00880 (BBSC_0181) rcrP 227705..229576 (+) 1872 WP_033516811.1 ABC transporter ATP-binding protein Regulator
  BBSC_RS00885 (BBSC_0182) rcrQ 229708..231543 (+) 1836 WP_033516809.1 ABC transporter ATP-binding protein Regulator
  BBSC_RS00890 (BBSC_0183) - 231521..232525 (-) 1005 WP_033516807.1 substrate-binding domain-containing protein -
  BBSC_RS13835 (BBSC_0184) - 232659..232868 (+) 210 WP_161787630.1 hypothetical protein -
  BBSC_RS00895 (BBSC_0185) - 233069..234424 (+) 1356 WP_033516806.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68246.90 Da        Isoelectric Point: 5.1129

>NTDB_id=65135 BBSC_RS00880 WP_033516811.1 227705..229576(+) (rcrP) [Bifidobacterium scardovii JCM 12489 = DSM 13734 strain JCM 12489]
MLRIMKYLSKAEIGQMLIALVTIIGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSQFSTASLITRSTNDITQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TGIAVVILLVAIVIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKELTETQLFTNRVMAF
MMPLMNTIMNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVRNGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGISFTAKQGQTVAFIGSTGSGKSSLINLVPRFYDVSQGQV
LVDGVDVRDYDLKSLRDKIGYVPQQSVLFKGTVASNVSYGDQPGESSDVEMADTSTPAGRKREAELIAAGRAAEGADMPA
EQLDRIKAAAGVAQASEFVERMDGEYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLEDCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=65135 BBSC_RS00880 WP_033516811.1 227705..229576(+) (rcrP) [Bifidobacterium scardovii JCM 12489 = DSM 13734 strain JCM 12489]
ATGCTACGCATCATGAAATACCTCTCCAAAGCGGAGATAGGTCAGATGCTCATCGCTCTGGTGACCATCATCGGTCAGGT
CTACTTCGACCTGAAGCTGCCTGACTACATGTCGGACATCACCACCTTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCATCTCGCTCGGCTCCGTGGCCTGCGCCATCATCACCGGCTATATCGCCGCG
CGCGTGGCCGCCTCGTTCACGCAGCGCCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTTCGGTCCGGCCGAAATGAG
CCAGTTCTCCACCGCCAGCCTCATCACCCGTTCCACCAACGACATCACGCAGGTGCAGATGTTCATCACCATGGGCCTGC
AGCTCATCGTCAAATCGCCGATCATGGCCGTGTGGGCGGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGGTCGCC
ACCGGCATCGCCGTGGTGATCCTGCTGGTGGCCATCGTCATCATGATGGCCATGGTCATGCCGAAGTTCAAGGCCATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAATCCAAATTCACCAAGGCCAACAAGGAGCTGACCGAAACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCCTACCTCATCGACGCCGC
CGGCCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTATTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACCGAG
CCGATCGTCAGGAACGGCACCAAAACCGCCGCCGATGTGGCCAAGACCGGGCAGCGGGGCACCGTGGAGTTCCGCAATGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTTGAAGGCATCAGCTTCACCGCCAAGCAGGGCCAGACCGTGGCGT
TCATCGGCTCCACCGGTTCCGGCAAATCCTCGCTCATCAATCTCGTGCCGCGCTTCTACGACGTCAGCCAGGGCCAGGTG
CTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGTCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGACCAGCCCGGAGAGTCGTCGGATGTCGAGATGGCGGACA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGAGCTGATCGCCGCCGGCAGGGCCGCGGAAGGCGCCGATATGCCGGCC
GAGCAGCTGGACCGCATCAAGGCCGCGGCCGGCGTGGCCCAGGCCAGCGAATTCGTGGAGCGCATGGACGGCGAGTATTC
CGCCGCGATCGCCCAGGGCGGCTCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGATTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGATGGCAAGGTCGTGGGTCAGGGTACGCACAAGGAACTGCTTGAGGACTGCGACGTGTACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACCGCGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(60-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087DDL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.341

100

0.491

Multiple sequence alignment