Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBSC_RS00885 Genome accession   NZ_AP012331
Coordinates   229708..231543 (+) Length   611 a.a.
NCBI ID   WP_033516809.1    Uniprot ID   A0A087DDL0
Organism   Bifidobacterium scardovii JCM 12489 = DSM 13734 strain JCM 12489     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 224708..236543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBSC_RS00870 (BBSC_0178) - 225269..226255 (+) 987 WP_046726158.1 aldo/keto reductase -
  BBSC_RS13830 - 226268..226408 (-) 141 WP_169742217.1 hypothetical protein -
  BBSC_RS00875 (BBSC_0180) - 226906..227433 (+) 528 WP_033516813.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBSC_RS00880 (BBSC_0181) rcrP 227705..229576 (+) 1872 WP_033516811.1 ABC transporter ATP-binding protein Regulator
  BBSC_RS00885 (BBSC_0182) rcrQ 229708..231543 (+) 1836 WP_033516809.1 ABC transporter ATP-binding protein Regulator
  BBSC_RS00890 (BBSC_0183) - 231521..232525 (-) 1005 WP_033516807.1 substrate-binding domain-containing protein -
  BBSC_RS13835 (BBSC_0184) - 232659..232868 (+) 210 WP_161787630.1 hypothetical protein -
  BBSC_RS00895 (BBSC_0185) - 233069..234424 (+) 1356 WP_033516806.1 ABC transporter substrate-binding protein -
  BBSC_RS00900 (BBSC_0186) - 234607..235563 (+) 957 WP_081892965.1 carbohydrate ABC transporter permease -
  BBSC_RS00905 (BBSC_0187) - 235560..236441 (+) 882 WP_033516804.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 66965.40 Da        Isoelectric Point: 6.6600

>NTDB_id=65136 BBSC_RS00885 WP_033516809.1 229708..231543(+) (rcrQ) [Bifidobacterium scardovii JCM 12489 = DSM 13734 strain JCM 12489]
MPRGPMGGGRTTEKPNDFGKVMGKLVNYCRNYLPVIVIALVLGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGKPVMNS
VDFGAVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASVLGLIIMMVIMKASQKYFSRQQIALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKSALLGANGHEVKGNVEFSHVRFGYEPDKPIIHDFSADVKAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDRQIEDAC
KAVGLDRFIRSLPQGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLKAGGFYADLYNSQFTLTGAR

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=65136 BBSC_RS00885 WP_033516809.1 229708..231543(+) (rcrQ) [Bifidobacterium scardovii JCM 12489 = DSM 13734 strain JCM 12489]
ATGCCAAGAGGACCAATGGGCGGTGGGCGCACCACCGAAAAGCCCAACGACTTCGGCAAGGTCATGGGCAAGCTCGTGAA
CTATTGCCGCAACTATCTTCCCGTCATCGTCATCGCGCTCGTCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAAATCGTCAAGGGCCTGCCCGCCATCGTCAACGGCAAGCCGGTGATGAATTCG
GTCGATTTCGGCGCTGTCGGTCATATCGCCTGGACGCTGGTGGCCCTGTACGTGGGCTATGCGGTGCTCGGCTACGTGCA
GAGCTGGATGATGGCCAACGTCACCCAGCGCACGGCCCAGCGCCTGCGCGAGTCGATCTCGGTCAAGATCAACAAACTGC
CGCTCAAGTACTTCGACAAGGTCAGCTACGGCGACGTGCTCTCCCGCATCACCAACGACGTGGACGCCATCGGCCAGACG
TTGGGCCAGTCGCTCGGCTCGCTGATCACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
CATCATGACCCTGTGCGCCATCGGCGCCAGCGTCCTGGGCCTGATCATCATGATGGTCATCATGAAGGCGTCCCAGAAGT
ACTTCTCCCGCCAGCAGATCGCGCTTGGCGACGTCAACGGCCATGTGGAGGAGATGTACGCCGGCCACCTCATCGTCAAG
GCGTACAACGGCGAGGCCGACTCGATCCGCCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCGTTGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTCGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGCTC
TCGCAGTTCGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTCGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGTCCGCCTTGCTCGGGGCAAACGGCCACGAGGTGAAGGGCAACGTGGAATTCAGCC
ATGTGCGGTTCGGCTACGAGCCGGACAAGCCGATCATCCACGACTTCTCGGCTGACGTGAAGGCCGGCCAGAAGGTGGCC
ATCGTCGGTCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTACGAGATTTCCGGCGGCTCGAT
CTCGATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCGATGGTGCTGCAGGATACAT
GGGTGTTCCGCGGCACCGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTGACCGACAGGCAGATCGAGGACGCCTGC
AAGGCCGTTGGCCTCGACCGTTTCATCCGCTCGCTGCCGCAGGGCTACGACACCGTGCTCGACGACAAGTCGAGCCTGTC
GCAGGGGCAGAAGCAGCTGCTCACCATCGCCCGCGCGATGGTGCAGGACGCTCCGATCCTGATTCTCGACGAGGCCACCA
GCTCCGTCGACACCCGCACCGAGGAGCTGATCCAGAAGGCGATGGACGCGCTGACGGTCGGGCGCACGAGCTTCGTGATC
GCCCACCGCCTGTCCACGATCCGCGACGCCGACATGATCCTGGTGATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
CGATGAGCTGCTCAAGGCCGGCGGCTTCTACGCCGATCTGTACAACAGCCAGTTCACGCTGACTGGCGCACGATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(79-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087DDL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.484

96.727

0.527

Multiple sequence alignment