Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB16_RS07710 Genome accession   NZ_CP108008
Coordinates   1668237..1668878 (-) Length   213 a.a.
NCBI ID   WP_271415166.1    Uniprot ID   A0ABV9WZQ4
Organism   Streptomyces sp. NBC_00334     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1663237..1673878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS07680 (OHB16_07690) - 1663699..1664205 (+) 507 WP_271415160.1 HNH endonuclease -
  OHB16_RS07685 (OHB16_07695) - 1664348..1665289 (-) 942 WP_328656759.1 SPFH domain-containing protein -
  OHB16_RS07690 (OHB16_07700) - 1665469..1665900 (-) 432 WP_271415162.1 NfeD family protein -
  OHB16_RS07695 (OHB16_07705) - 1665954..1666751 (-) 798 WP_271415163.1 ABC transporter ATP-binding protein -
  OHB16_RS07700 (OHB16_07710) - 1666905..1667684 (+) 780 WP_271415164.1 hypothetical protein -
  OHB16_RS07705 (OHB16_07715) chpE 1667833..1668081 (-) 249 WP_271415165.1 chaplin ChpE -
  OHB16_RS07710 (OHB16_07720) vraR 1668237..1668878 (-) 642 WP_271415166.1 response regulator transcription factor Regulator
  OHB16_RS07715 (OHB16_07725) - 1668871..1670016 (-) 1146 WP_328656761.1 GAF domain-containing sensor histidine kinase -
  OHB16_RS07720 (OHB16_07730) - 1670234..1670929 (+) 696 WP_271415168.1 SDR family oxidoreductase -
  OHB16_RS07725 (OHB16_07735) - 1670929..1672050 (+) 1122 WP_271415169.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHB16_RS07730 (OHB16_07740) - 1672425..1673141 (+) 717 WP_271415170.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22864.15 Da        Isoelectric Point: 5.9508

>NTDB_id=651324 OHB16_RS07710 WP_271415166.1 1668237..1668878(-) (vraR) [Streptomyces sp. NBC_00334]
MADAIKVLIVDDHQVVRRGLRTFLEVQDDIRVVGEAADGAEGVARAEELKPDVILMDVKMPGMDGVDALRGLRELDNHAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEASNSGPSRAGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=651324 OHB16_RS07710 WP_271415166.1 1668237..1668878(-) (vraR) [Streptomyces sp. NBC_00334]
GTGGCTGACGCAATCAAGGTGCTGATCGTCGACGACCACCAGGTGGTCCGACGGGGCCTGCGCACCTTCCTGGAGGTGCA
GGACGACATCCGGGTCGTCGGCGAGGCGGCCGACGGCGCCGAGGGCGTCGCACGCGCCGAGGAACTGAAACCCGACGTGA
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGCGTCGACGCGCTGCGCGGACTGCGCGAGCTGGACAACCACGCGCGC
GTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACCGTCGTCCCGGCCCTGCGGGCGGGCGCCGCCGGCTACGTCTACAA
GGACGTCGACCCCGACGCGCTGGCCGGTGCCATCCGCTCCGTCCACGCCGGCCACATCCTGCTCCAGCCCGAGGTCGCGG
GCGCCCTGCTGAGCCAGGAGGCAAGCAACTCGGGCCCGAGCAGAGCGGGCTCCCTCACCGAGCGGGAGCGCGAGGTGCTG
GGCCTGATAGCGGACGGCCGCTCCAACCGGGAGATCGCCCGTGCGCTGGTGCTCTCCGAGAAGACCGTGAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTGGCGGACCGCACCCAGGCCGCCCTGTGGGCCGTACGCCACGGAGTGACCGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.919

99.061

0.465
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.404