Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA37_RS33295 Genome accession   NZ_CP108006
Coordinates   7334827..7335477 (-) Length   216 a.a.
NCBI ID   WP_266910817.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7329827..7340477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS33280 (OHA37_33295) - 7331239..7332078 (-) 840 WP_266910811.1 alpha/beta fold hydrolase -
  OHA37_RS33285 (OHA37_33300) - 7332480..7333241 (+) 762 WP_266910813.1 GntR family transcriptional regulator -
  OHA37_RS33290 (OHA37_33305) - 7333560..7334714 (-) 1155 WP_266910815.1 ROK family transcriptional regulator -
  OHA37_RS33295 (OHA37_33310) vraR 7334827..7335477 (-) 651 WP_266910817.1 response regulator transcription factor Regulator
  OHA37_RS33300 (OHA37_33315) - 7335482..7336675 (-) 1194 WP_266910819.1 histidine kinase -
  OHA37_RS33305 (OHA37_33320) - 7336784..7337695 (+) 912 WP_266910821.1 ATP-binding cassette domain-containing protein -
  OHA37_RS33310 (OHA37_33325) - 7337722..7338471 (+) 750 WP_266910823.1 ABC transporter permease -
  OHA37_RS33315 (OHA37_33330) - 7338577..7339227 (-) 651 WP_266913306.1 HAD family hydrolase -
  OHA37_RS33320 (OHA37_33335) mug 7339273..7339833 (-) 561 WP_266913308.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23297.97 Da        Isoelectric Point: 4.9794

>NTDB_id=651290 OHA37_RS33295 WP_266910817.1 7334827..7335477(-) (vraR) [Streptomyces sp. NBC_00335]
MPVTVLLVDDEPLVRAGLRAVLDAQPDIEVIGEAADGAAVVPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRSVDSPPKI
LVVTTFENDEYVYQALRAGADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRSLAAEYGNRQARTVLERAALTEREEAV
LRLMAKGLTNIEISRELIVGTETVKSHVSAILAKLGARDRTQAVITAYESGFVAPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=651290 OHA37_RS33295 WP_266910817.1 7334827..7335477(-) (vraR) [Streptomyces sp. NBC_00335]
ATGCCGGTTACCGTACTGCTCGTCGACGACGAACCCCTGGTGCGCGCGGGTCTGCGCGCCGTCCTGGACGCCCAGCCCGA
CATCGAGGTGATCGGCGAGGCCGCCGACGGCGCCGCGGTGGTCCCGCTGGTGCGGCAACTGCGCCCCGACGTCGTGGCGA
TGGACGTGCGGATGCCGCTGCTCGACGGGATCGAGGCGACCCGGGCGGTCCTGCGGAGCGTGGACTCGCCGCCGAAGATC
CTCGTGGTCACCACCTTCGAGAACGACGAGTACGTCTACCAGGCGCTGCGGGCCGGCGCCGACGGGTTCCTGCTGAAGCG
GGCCCGCCCGTCGGAGATCGTGCACGCGGTCCGTCTGGTGGCGGAGGGCGAGACGCTGCTCTTCCCCGCGGCGGTCCGCT
CGCTGGCCGCCGAGTACGGCAACCGCCAGGCACGGACGGTACTGGAGCGGGCGGCGCTGACCGAGCGCGAGGAGGCCGTG
CTCCGGCTGATGGCGAAGGGGCTGACCAACATCGAGATCTCCCGCGAGCTGATCGTCGGCACGGAGACGGTGAAGTCCCA
CGTCAGCGCGATCCTGGCGAAGCTGGGGGCGCGGGACCGGACCCAGGCAGTGATCACCGCGTACGAGTCCGGGTTCGTCG
CTCCCGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.187

99.074

0.398
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.366