Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA37_RS31935 Genome accession   NZ_CP108006
Coordinates   7026980..7027612 (-) Length   210 a.a.
NCBI ID   WP_266910373.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7021980..7032612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS31915 (OHA37_31940) - 7022405..7023634 (-) 1230 WP_266910365.1 DUF349 domain-containing protein -
  OHA37_RS31920 (OHA37_31945) - 7023858..7024640 (-) 783 WP_266910367.1 peptidylprolyl isomerase -
  OHA37_RS31925 (OHA37_31950) - 7024794..7025504 (+) 711 WP_266910369.1 MBL fold metallo-hydrolase -
  OHA37_RS31930 (OHA37_31955) hisS 7025515..7026774 (+) 1260 WP_266910371.1 histidine--tRNA ligase -
  OHA37_RS31935 (OHA37_31960) vraR 7026980..7027612 (-) 633 WP_266910373.1 response regulator transcription factor Regulator
  OHA37_RS31940 (OHA37_31965) - 7027626..7028864 (-) 1239 WP_266910375.1 sensor histidine kinase -
  OHA37_RS31945 (OHA37_31970) - 7028822..7029691 (-) 870 WP_266910377.1 ABC transporter permease -
  OHA37_RS31950 (OHA37_31975) - 7029688..7030566 (-) 879 WP_266910379.1 ABC transporter ATP-binding protein -
  OHA37_RS31955 (OHA37_31980) - 7030723..7031343 (+) 621 WP_266910381.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22539.25 Da        Isoelectric Point: 6.7417

>NTDB_id=651287 OHA37_RS31935 WP_266910373.1 7026980..7027612(-) (vraR) [Streptomyces sp. NBC_00335]
MIRILLADDHPVVREGLRGMLAAEPDLEVVAEASNGPQAEALAARLVPEGGLDLILMDLRMPGGDGVESIARITAARLPV
RVVVLTTYEEDRDILRAVEAGAAGYLLKDMARAELAAAVRAAVRGETVLAPTVAGRLVDRLRTRPSLPRLSDREVEVLRL
VAGGATNAEIGRRLFVAESTVKTHMLRIFAKLEVTDRTAAVTTAMRHGLL

Nucleotide


Download         Length: 633 bp        

>NTDB_id=651287 OHA37_RS31935 WP_266910373.1 7026980..7027612(-) (vraR) [Streptomyces sp. NBC_00335]
ATGATCCGCATCCTGCTGGCCGACGACCACCCGGTGGTACGGGAGGGCCTGCGCGGCATGCTCGCCGCCGAACCGGACCT
GGAGGTCGTCGCGGAGGCCTCGAACGGCCCGCAGGCGGAGGCGCTCGCCGCGCGGCTGGTCCCCGAAGGCGGCCTGGACC
TGATCCTGATGGACCTGCGGATGCCGGGTGGCGACGGAGTCGAATCGATCGCCCGCATCACGGCGGCCCGGCTGCCGGTA
CGGGTGGTGGTGCTGACCACCTACGAGGAGGACCGGGACATCCTGCGCGCGGTGGAGGCGGGGGCGGCGGGCTATCTGCT
GAAGGACATGGCGCGGGCGGAACTGGCGGCCGCGGTCCGGGCGGCCGTGCGCGGCGAGACGGTCCTCGCCCCGACGGTGG
CGGGCCGCCTGGTGGACCGGCTCCGCACCCGCCCGTCGCTGCCGCGGCTCTCCGACCGGGAGGTGGAGGTGCTCCGCCTG
GTCGCCGGGGGCGCGACCAATGCCGAGATCGGCCGCCGGCTGTTCGTGGCGGAGTCCACGGTCAAGACGCACATGCTGCG
CATCTTCGCGAAGCTGGAGGTCACGGACCGCACCGCGGCGGTGACCACGGCCATGCGGCACGGCCTCCTGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-119)

Bacterial regulatory proteins, luxR family (GerE)

(150-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.429

100

0.414
  degU Bacillus subtilis subsp. subtilis str. 168

34.802

100

0.376