Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA37_RS20805 Genome accession   NZ_CP108006
Coordinates   4620592..4621212 (-) Length   206 a.a.
NCBI ID   WP_266907377.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4615592..4626212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS20780 (OHA37_20785) - 4616628..4617338 (+) 711 WP_266912947.1 pentapeptide repeat-containing protein -
  OHA37_RS20785 (OHA37_20790) - 4617766..4618269 (-) 504 WP_266907369.1 hypothetical protein -
  OHA37_RS20790 (OHA37_20795) - 4618441..4619160 (+) 720 WP_266907371.1 histidine kinase -
  OHA37_RS20795 (OHA37_20800) - 4619157..4619789 (+) 633 WP_266907373.1 response regulator transcription factor -
  OHA37_RS20800 (OHA37_20805) - 4619828..4620442 (-) 615 WP_266907375.1 nuclear transport factor 2 family protein -
  OHA37_RS20805 (OHA37_20810) vraR 4620592..4621212 (-) 621 WP_266907377.1 response regulator transcription factor Regulator
  OHA37_RS20810 (OHA37_20815) - 4621209..4622342 (-) 1134 WP_266907379.1 sensor histidine kinase -
  OHA37_RS20815 (OHA37_20820) - 4622852..4623409 (+) 558 WP_266907381.1 heme-binding protein -
  OHA37_RS20820 (OHA37_20825) - 4623459..4624916 (+) 1458 WP_266907383.1 M1 family metallopeptidase -
  OHA37_RS20825 (OHA37_20830) - 4624929..4625462 (-) 534 WP_266907385.1 GNAT family N-acetyltransferase -
  OHA37_RS20830 (OHA37_20835) - 4625548..4626123 (-) 576 WP_250744549.1 TerD family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21803.11 Da        Isoelectric Point: 6.0144

>NTDB_id=651263 OHA37_RS20805 WP_266907377.1 4620592..4621212(-) (vraR) [Streptomyces sp. NBC_00335]
MTTILLCDDHVVVRAGLLALLGSEPDIEVLGEAGSGEEAVALAAKLRPDVVLMDLQLGEGIDGVEATRRITAAPKPPHVL
VLTTYDTDADITRAIGAGATGYLLKAERPEELFAAIHSAAQGRTTLSAPVASRVMAHMRGTRPTLTDRELDILGQLARGL
GNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 621 bp        

>NTDB_id=651263 OHA37_RS20805 WP_266907377.1 4620592..4621212(-) (vraR) [Streptomyces sp. NBC_00335]
ATGACCACGATCCTCCTCTGCGACGACCACGTCGTGGTCCGCGCCGGCCTGCTCGCCCTGCTCGGCAGCGAGCCGGACAT
CGAGGTGCTCGGCGAGGCGGGCAGCGGCGAGGAAGCGGTCGCGCTCGCGGCCAAACTCCGCCCCGACGTGGTCCTGATGG
ACCTCCAGCTCGGCGAGGGCATCGACGGCGTGGAGGCCACCCGCCGCATCACCGCCGCCCCGAAGCCCCCGCACGTCCTG
GTCCTGACCACGTACGACACCGACGCGGACATCACCCGGGCCATCGGCGCGGGCGCCACGGGCTACCTCCTGAAGGCGGA
ACGCCCGGAGGAGCTGTTCGCCGCGATCCACTCCGCAGCCCAGGGCCGAACCACCCTCTCCGCCCCCGTGGCCAGCCGCG
TGATGGCCCACATGCGCGGCACCCGGCCCACCCTGACCGACCGTGAGCTCGACATCCTCGGCCAGCTCGCCCGCGGCCTC
GGCAACCGCGACATCGCCCGCGCCCTGTTCATCAGCGAGGCGACGGTCAAGACCCACCTGGGCCGCATCTACGACAAGCT
CGGCGTCGACACCCGCGCGGGCGCGGTCTCGGTGGCCAAGGAGCAGCGCCTCCTTCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(144-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.537

99.515

0.383
  degU Bacillus subtilis subsp. subtilis str. 168

34.562

100

0.364