Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA37_RS17570 Genome accession   NZ_CP108006
Coordinates   3944840..3945439 (-) Length   199 a.a.
NCBI ID   WP_243330636.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3939840..3950439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS17550 (OHA37_17550) - 3940735..3941469 (-) 735 WP_266912886.1 SigE family RNA polymerase sigma factor -
  OHA37_RS17555 (OHA37_17555) - 3941710..3942804 (-) 1095 WP_266906271.1 aspartate-semialdehyde dehydrogenase -
  OHA37_RS17560 (OHA37_17560) - 3942801..3944078 (-) 1278 WP_266906273.1 aspartate kinase -
  OHA37_RS17565 (OHA37_17565) - 3944200..3944847 (-) 648 WP_266906275.1 DUF5063 domain-containing protein -
  OHA37_RS17570 (OHA37_17570) recR 3944840..3945439 (-) 600 WP_243330636.1 recombination mediator RecR Machinery gene
  OHA37_RS17575 (OHA37_17575) - 3945505..3945849 (-) 345 WP_250744897.1 YbaB/EbfC family nucleoid-associated protein -
  OHA37_RS17580 (OHA37_17580) - 3946118..3946843 (+) 726 WP_266906291.1 SLATT domain-containing protein -
  OHA37_RS17585 (OHA37_17585) - 3946901..3947551 (-) 651 WP_243330640.1 hypothetical protein -
  OHA37_RS17590 (OHA37_17590) - 3947661..3950186 (-) 2526 WP_266906293.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21906.26 Da        Isoelectric Point: 5.1721

>NTDB_id=651253 OHA37_RS17570 WP_243330636.1 3944840..3945439(-) (recR) [Streptomyces sp. NBC_00335]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDLTV
ICVVEESKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSVTELIIATDPNLEGEATATYLARMMK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=651253 OHA37_RS17570 WP_243330636.1 3944840..3945439(-) (recR) [Streptomyces sp. NBC_00335]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGATGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGTGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGATCCGCGCCGCGATCTGACGGTC
ATCTGTGTGGTCGAGGAGTCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGGGAGCTGCTGGCGCGGCTCGCGGACGGTT
CGGTCACCGAGCTGATCATCGCGACCGACCCGAATCTGGAAGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATGAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTAGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472