Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA37_RS16395 Genome accession   NZ_CP108006
Coordinates   3674854..3676269 (+) Length   471 a.a.
NCBI ID   WP_266905877.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3669854..3681269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS16380 (OHA37_16375) - 3670974..3671921 (-) 948 WP_266905871.1 Ppx/GppA phosphatase family protein -
  OHA37_RS16385 (OHA37_16380) - 3671985..3672821 (+) 837 WP_266905873.1 hypothetical protein -
  OHA37_RS16390 (OHA37_16385) - 3672831..3674657 (-) 1827 WP_266905875.1 hypothetical protein -
  OHA37_RS16395 (OHA37_16390) radA/sms 3674854..3676269 (+) 1416 WP_266905877.1 DNA repair protein RadA Machinery gene
  OHA37_RS16400 (OHA37_16395) disA 3676519..3677643 (+) 1125 WP_266905879.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA37_RS16405 (OHA37_16400) - 3677776..3678606 (-) 831 WP_266905881.1 hypothetical protein -
  OHA37_RS16410 (OHA37_16405) - 3678775..3679383 (+) 609 WP_266905883.1 phosphatase PAP2 family protein -
  OHA37_RS16415 (OHA37_16410) - 3679458..3680387 (+) 930 WP_266905885.1 A/G-specific adenine glycosylase -
  OHA37_RS16420 (OHA37_16415) - 3680567..3681127 (+) 561 WP_053678383.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 49365.51 Da        Isoelectric Point: 8.2438

>NTDB_id=651247 OHA37_RS16395 WP_266905877.1 3674854..3676269(+) (radA/sms) [Streptomyces sp. NBC_00335]
MAARTSRSSAKDRPSYRCTECGYSTAKWLGRCPECQAWGTVEELGGAPAVRTTAAGRVTTAAVPIGQVDVRTATARSTGV
SELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSEHLYLAAETDLS
AVLGHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGTTDEVGCFELTDEGINGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAYRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRVLPRGRSRTPAKERATD

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=651247 OHA37_RS16395 WP_266905877.1 3674854..3676269(+) (radA/sms) [Streptomyces sp. NBC_00335]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGTTGTACCGAGTGCGGGTACTCCACCGCCAA
GTGGCTCGGCCGGTGCCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAGCTCGGCGGCGCCCCCGCCGTGCGGACCACCG
CGGCCGGCCGGGTCACGACGGCCGCCGTGCCGATCGGGCAGGTCGACGTGCGGACGGCGACCGCGCGCAGCACGGGCGTG
AGCGAGCTGGACCGGGTGCTGGGCGGCGGGCTGGTCCCCGGCGCGGTCGTCCTGCTCGCGGGCGAGCCGGGCGTCGGCAA
GTCCACGCTGCTGCTCGACGTCGCGGCGAAGGCCGCCTCCGACGAGCACCGCACGCTGTACGTCACGGGCGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCGCTCAGCGAGCACCTCTACCTGGCCGCCGAGACCGATCTGTCC
GCCGTCCTCGGGCACCTCGACGCCGTGAAGCCCTCGCTGCTGATCATGGACTCCGTGCAGACGGTCGCCTCCCCCGAGAT
CGACGGCGCGCCCGGCGGCATGGCGCAGGTCCGTGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGT
CCACGCTGCTGGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGTCCCCGGCTGCTGGAGCACCTGGTCGACGTCGTA
CTGAGCTTCGAGGGCGACCGGCACGCACGGCTGCGCCTCGTGCGCGGGGTGAAGAACCGGTACGGCACCACGGACGAGGT
CGGCTGCTTCGAGCTCACCGACGAGGGCATCAACGGCCTCGCCGACCCGAGCGGACTGTTCCTGACCCGCCGCGCCGAGG
CCGTCCCCGGCACCTGTCTGACGGTGACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACGGTGGAC
TCGCAGATCCCCTCGCCGCGCCGGACCACCTCCGGGCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGAGCA
GCGCGGGCGGATCACGGCCCTCGGCAAGCGGGACATCTACACCGCCACCGTGGGCGGGGTGAAGCTCACCGAGCCGGCCG
CCGACCTGGCCGTCGCGCTGGCCCTGGCCTCGGCCGCCAGCGACGTACCGCTCCCGAAGAACCTGGTGGCCATCGGCGAG
GTCGGGCTCGCGGGCGAGGTCCGGCGCGTGACGGGGGTGCAGCGCCGGCTCGCGGAGGCGTACCGGCTGGGCTTCACCCA
CGCACTGGTGCCGACGGACCCGGGGAAGGTGCCGGCGGGCATGAAGGTGACCGAGGTCGCCGACATGGGCGACGCCCTGC
GGGTCCTGCCGCGCGGGCGGTCGCGTACGCCGGCCAAGGAGCGGGCCACCGACTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(373-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.605

96.178

0.41
  radA Streptococcus mitis SK321

43.897

90.446

0.397
  radA Streptococcus pneumoniae Rx1

43.897

90.446

0.397
  radA Streptococcus pneumoniae D39

43.897

90.446

0.397
  radA Streptococcus pneumoniae R6

43.897

90.446

0.397
  radA Streptococcus pneumoniae TIGR4

43.897

90.446

0.397
  radA Streptococcus mitis NCTC 12261

43.897

90.446

0.397