Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   L3474_RS04565 Genome accession   NZ_CP091450
Coordinates   908900..910249 (+) Length   449 a.a.
NCBI ID   WP_263275199.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3641/15     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 903900..915249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3474_RS04545 (L3474_04510) coaB 904055..904744 (-) 690 WP_000699489.1 phosphopantothenate--cysteine ligase -
  L3474_RS04550 (L3474_04515) - 904974..906644 (+) 1671 WP_000845287.1 formate--tetrahydrofolate ligase -
  L3474_RS04555 (L3474_04520) mutY 906973..908148 (+) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  L3474_RS04560 (L3474_04525) micA 908203..908907 (+) 705 WP_000722076.1 response regulator YycF Regulator
  L3474_RS04565 (L3474_04530) micB 908900..910249 (+) 1350 WP_263275199.1 cell wall metabolism sensor histidine kinase VicK Regulator
  L3474_RS04570 (L3474_04535) vicX 910251..911060 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  L3474_RS04575 (L3474_04540) relB 911151..911393 (+) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  L3474_RS04580 (L3474_04545) - 911395..911649 (+) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  L3474_RS04585 (L3474_04550) - 911696..912469 (+) 774 WP_000731129.1 potassium channel family protein -
  L3474_RS04590 (L3474_04555) - 912785..914131 (-) 1347 WP_001814919.1 IS1380-like element ISSpn5 family transposase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51754.50 Da        Isoelectric Point: 4.9706

>NTDB_id=651242 L3474_RS04565 WP_263275199.1 908900..910249(+) (micB) [Streptococcus pneumoniae strain 3641/15]
MLDLLKQTIFTRDFIFILILLGFILVVTLLLLENRRDNIQLKQINQKVKDLIAGDYSKVLDMQGVSEITNITNNLNDLSE
VIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILELLKIEENYELRDLITQSPE
LLLDSQDINGEYLNLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALC
ETVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIW
MEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLG
LSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLPYDKDAVKEEVWEDEVED

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=651242 L3474_RS04565 WP_263275199.1 908900..910249(+) (micB) [Streptococcus pneumoniae strain 3641/15]
ATGCTTGATTTACTGAAACAAACCATTTTTACCAGAGATTTTATCTTTATCCTGATTTTGTTAGGTTTCATCCTTGTTGT
GACCCTCTTATTACTGGAAAATAGACGTGATAATATTCAGTTGAAGCAAATCAATCAAAAGGTTAAAGATTTGATTGCAG
GAGATTATTCCAAGGTTCTTGATATGCAAGGTGTGTCTGAAATCACCAATATTACCAATAATTTGAATGACTTGTCGGAG
GTTATTCGTCTCACTCAGGAAAATCTAGAACAAGAGAGTAAGAGGCTAAATAGTATTCTGTTTTATATGACAGATGGGGT
TCTTGCGACCAACCGTCGGGGTCAGATTATCATGATTAACGATACAGCCAAGAAGCAACTGGGGTTGGTTAAGGAAGATG
TTCTGAATAGAAGCATTTTGGAATTGCTCAAGATAGAAGAAAACTATGAATTGCGTGATTTGATTACCCAAAGTCCAGAA
TTGTTGCTAGATTCCCAAGATATCAATGGCGAATATTTGAACCTTCGAGTTCGCTTTGCCTTGATACGTCGAGAGTCTGG
CTTTATTTCAGGTTTGGTGGCTGTTTTGCATGATACGACGGAGCAGGAGAAGGAAGAACGCGAACGAAGACTCTTTGTTT
CCAATGTTAGCCATGAGTTACGGACTCCTCTGACTAGCGTAAAATCCTATCTTGAAGCCTTGGATGAGGGGGCTTTGTGT
GAAACTGTAGCACCAGACTTTATCAAGGTTTCTCTTGATGAGACCAACCGTATGATGCGCATGGTGACGGATCTCCTCCA
TCTTTCACGTATTGATAATGCTACCAGTCACCTAGATGTGGAACTGATTAACTTCACTGCTTTTATTACCTTTATCCTCA
ATCGTTTTGACAAGATGAAAGGACAGGAAAAGGAGAAAAAATATGAGTTGGTGAGAGATTATCCCATCAATTCTATCTGG
ATGGAAATTGATACAGATAAGATGACGCAGGTTGTCGACAATATTTTAAATAATGCTATTAAGTATTCGCCAGATGGGGG
TAAAATCACTGTCAGAATGAAGACAACTGAAGACCAGATGATTTTATCCATTTCTGACCACGGTTTGGGGATTCCTAAGC
AGGATTTACCACGTATCTTTGACCGTTTCTATCGTGTGGATCGTGCTAGAAGTCGTGCACAAGGTGGTACAGGTCTAGGA
CTGTCTATCGCTAAAGAAATTATCAAACAACATAAGGGCTTTATTTGGGCCAAGAGTGAATACGGCAAGGGTTCAACCTT
TACCATTGTGCTCCCTTATGATAAGGATGCAGTGAAAGAAGAAGTATGGGAGGATGAAGTAGAAGACTAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(98-198)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

99.555

100

0.996
  vicK Streptococcus mutans UA159

69.9

89.532

0.626