Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA37_RS11835 Genome accession   NZ_CP108006
Coordinates   2705682..2706323 (+) Length   213 a.a.
NCBI ID   WP_266904418.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2700682..2711323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS11810 (OHA37_11820) - 2701595..2701918 (-) 324 WP_243336243.1 STAS domain-containing protein -
  OHA37_RS11815 (OHA37_11825) - 2702078..2702926 (-) 849 WP_250744745.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OHA37_RS11820 (OHA37_11830) - 2703125..2703697 (+) 573 WP_266904412.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OHA37_RS11825 (OHA37_11835) - 2703714..2704274 (-) 561 WP_266904414.1 hypothetical protein -
  OHA37_RS11830 (OHA37_11840) - 2704432..2705685 (+) 1254 WP_266904416.1 histidine kinase -
  OHA37_RS11835 (OHA37_11845) vraR 2705682..2706323 (+) 642 WP_266904418.1 response regulator transcription factor Regulator
  OHA37_RS11840 (OHA37_11850) - 2706611..2708374 (+) 1764 WP_266912700.1 glycoside hydrolase family 18 chitinase -
  OHA37_RS11845 (OHA37_11855) - 2708535..2708981 (-) 447 WP_266904420.1 DUF2550 domain-containing protein -
  OHA37_RS11850 (OHA37_11860) - 2709136..2709510 (-) 375 WP_243336233.1 F0F1 ATP synthase subunit epsilon -
  OHA37_RS11855 (OHA37_11865) atpD 2709640..2711079 (-) 1440 WP_266881151.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22638.24 Da        Isoelectric Point: 4.5842

>NTDB_id=651234 OHA37_RS11835 WP_266904418.1 2705682..2706323(+) (vraR) [Streptomyces sp. NBC_00335]
MTIRVVVAEDQSAVRAGLVLILRSAGDIEVVGEAADGEEAVRLARELRPDLVLMDVQMPRLDGVSATRLVVAEALADVLV
LTTFDLDEYVFGALRAGASGFLLKDADAAELITAVRTVARGEGLIAPAVTRRLIAEFADPRPVRVPVPATVESLTPRERE
VLGCLGEGLSNAEIAVRLEMADATAKTHVSRVLAKLELRSRVQAAVLAQELGL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=651234 OHA37_RS11835 WP_266904418.1 2705682..2706323(+) (vraR) [Streptomyces sp. NBC_00335]
GTGACGATCAGGGTCGTGGTGGCGGAGGACCAGAGCGCGGTACGGGCCGGGCTGGTCCTGATCCTGCGCAGCGCCGGCGA
CATCGAGGTGGTGGGCGAGGCCGCGGACGGGGAGGAGGCCGTGCGCCTGGCCCGCGAGCTGCGGCCCGACCTGGTGCTCA
TGGACGTGCAGATGCCGCGCCTGGACGGGGTGTCGGCGACCCGTCTGGTGGTCGCGGAGGCTCTGGCCGACGTCCTCGTG
CTCACCACCTTCGACCTGGACGAGTACGTCTTCGGCGCGCTGCGCGCGGGCGCCTCGGGCTTCCTGCTGAAGGACGCGGA
CGCGGCGGAGCTGATCACGGCGGTACGGACCGTCGCGCGCGGGGAGGGCCTGATCGCCCCGGCGGTGACCCGGCGGCTGA
TCGCCGAGTTCGCGGATCCGCGGCCCGTACGCGTCCCCGTGCCGGCGACGGTGGAATCGCTGACCCCGCGCGAGCGGGAG
GTCCTGGGGTGCCTGGGCGAGGGGCTGTCGAACGCGGAGATCGCCGTGCGCCTGGAGATGGCGGACGCGACGGCGAAGAC
CCACGTCAGCCGGGTGCTGGCCAAGCTGGAGCTGCGCAGCCGGGTCCAAGCGGCAGTGCTGGCACAGGAGTTGGGGCTCT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.187

100

0.404
  degU Bacillus subtilis subsp. subtilis str. 168

38.288

100

0.399