Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LZS83_RS20630 Genome accession   NZ_CP091444
Coordinates   4044535..4046274 (-) Length   579 a.a.
NCBI ID   WP_242252181.1    Uniprot ID   -
Organism   Bacillus cereus strain MO2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4039535..4051274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZS83_RS20600 - 4039670..4039903 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  LZS83_RS20605 - 4039953..4040681 (-) 729 WP_063223009.1 glycerophosphodiester phosphodiesterase -
  LZS83_RS20610 - 4040732..4040878 (+) 147 WP_309259310.1 YycC family protein -
  LZS83_RS20615 - 4041118..4041680 (-) 563 Protein_4008 PRK06770 family protein -
  LZS83_RS20620 spo0A 4042036..4042830 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  LZS83_RS20625 spoIVB 4043118..4044416 (-) 1299 WP_063223004.1 SpoIVB peptidase -
  LZS83_RS20630 recN 4044535..4046274 (-) 1740 WP_242252181.1 DNA repair protein RecN Machinery gene
  LZS83_RS20635 argR 4046542..4046991 (-) 450 WP_001032581.1 arginine repressor ArgR -
  LZS83_RS20640 - 4047134..4047973 (-) 840 WP_001274744.1 TlyA family RNA methyltransferase -
  LZS83_RS20645 dxs 4047977..4049869 (-) 1893 WP_063223002.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LZS83_RS20650 ispA 4050172..4051062 (-) 891 WP_242252183.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65873.02 Da        Isoelectric Point: 4.8618

>NTDB_id=651207 LZS83_RS20630 WP_242252181.1 4044535..4046274(-) (recN) [Bacillus cereus strain MO2]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYRNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHRFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=651207 LZS83_RS20630 WP_242252181.1 4044535..4046274(-) (recN) [Bacillus cereus strain MO2]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGAGCCGGGAAATCGATTATTATCGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCGGCGGAAT
TTGTTCGATATGGAACAGAAAAAGCTGAGATAGAGGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATTGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAGAGTGTATG
TCGTGTAAATGGGAAACTGGTTACTCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCATG
AAACGCAAGATTTAATGAATGAAGAGCGTCATCTATTTATGCTCGATCATTTTGATGGAGAACGTATCGTTAAACAATTG
GATATATATCGAAACGTATACGCTGATTATGAGAAGTTGAAAAAACAGTTAAAATCATTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGCGATGCATATCGTTCGTTAAGCGCT
GATGGACAAGGATTAGACAATGTGCGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAATGTATCAAGA
AAATCATGATTCCATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATACATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGAAGGAAATGCTGAAGAGCCTCTTGTGGAGGGAGCGCCGGTAAGACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAAGTCGCTTCTGGCGGAGAGCTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGTCGGGTCGCACAGGCTATTGCAGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACGTCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCGGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCGTTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599