Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L1F29_RS34060 Genome accession   NZ_CP091430
Coordinates   7597539..7598078 (-) Length   179 a.a.
NCBI ID   WP_258386383.1    Uniprot ID   -
Organism   Paenibacillus spongiae strain PHS-Z3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7592539..7603078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F29_RS34035 (L1F29_33935) - 7592755..7594791 (-) 2037 WP_258386378.1 amidohydrolase family protein -
  L1F29_RS34040 (L1F29_33940) - 7594926..7595372 (-) 447 WP_258386379.1 CBS domain-containing protein -
  L1F29_RS34045 (L1F29_33945) - 7595450..7596529 (-) 1080 WP_258386380.1 LCP family protein -
  L1F29_RS34050 (L1F29_33950) - 7596760..7597107 (+) 348 WP_258386381.1 DUF4870 domain-containing protein -
  L1F29_RS34055 (L1F29_33955) rpsR 7597241..7597519 (-) 279 WP_258386382.1 30S ribosomal protein S18 -
  L1F29_RS34060 (L1F29_33960) ssbA 7597539..7598078 (-) 540 WP_258386383.1 single-stranded DNA-binding protein Machinery gene
  L1F29_RS34065 (L1F29_33965) rpsF 7598115..7598399 (-) 285 WP_258386384.1 30S ribosomal protein S6 -
  L1F29_RS34070 (L1F29_33970) - 7598642..7598821 (+) 180 WP_258386385.1 YjzC family protein -
  L1F29_RS34080 (L1F29_33980) - 7599943..7600170 (-) 228 WP_258386386.1 DUF951 domain-containing protein -
  L1F29_RS34085 (L1F29_33985) - 7600198..7600458 (-) 261 WP_258386387.1 DUF3343 domain-containing protein -
  L1F29_RS34090 (L1F29_33990) yyaC 7600623..7601213 (+) 591 WP_258386388.1 spore protease YyaC -
  L1F29_RS34095 (L1F29_33995) - 7601188..7601679 (-) 492 WP_258386389.1 DUF4446 family protein -
  L1F29_RS34100 (L1F29_34000) - 7601711..7602808 (-) 1098 WP_258389903.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19186.86 Da        Isoelectric Point: 4.8700

>NTDB_id=651154 L1F29_RS34060 WP_258386383.1 7597539..7598078(-) (ssbA) [Paenibacillus spongiae strain PHS-Z3]
MLNRVILIGRLTRDPEMRYTPAGVAVTQFTLAVDRPFTSGQGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESGNREGSREEGGNFGGGGYGGQGGQGNQGGGSYGGNSSGGGGGRSGGSSSSRNDNR
DPFSDDGRPIDISEDDLPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=651154 L1F29_RS34060 WP_258386383.1 7597539..7598078(-) (ssbA) [Paenibacillus spongiae strain PHS-Z3]
ATGTTGAACCGTGTTATTCTGATCGGCAGATTAACGAGGGATCCAGAAATGCGCTATACACCGGCAGGCGTTGCGGTAAC
GCAATTTACGTTAGCCGTGGACCGTCCGTTTACCAGCGGACAAGGCGAGCGGGAAGCTGATTTTATCCCGGTCGTGACAT
GGCGTCAGCTTGCAGAAACATGCGCCAATTATTTGCGCAAAGGTCGCTTAACAGCGGTCGAAGGCCGAATACAGGTTCGA
AACTACGAGAACAACGAAGGCAAGCGCGTCTACGTGACGGAAGTTATTGCCGATAACGTGCGGTTCTTGGAGTCCGGCAA
CCGTGAAGGCTCGCGTGAAGAAGGCGGCAATTTCGGCGGCGGAGGTTATGGCGGACAAGGTGGCCAAGGCAACCAAGGCG
GCGGTTCATACGGAGGAAACTCCTCTGGCGGCGGCGGTGGCCGATCCGGTGGCTCAAGCTCATCCAGGAATGACAATCGT
GATCCGTTCTCAGACGACGGACGCCCGATCGATATATCGGAAGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.57
  ssb Latilactobacillus sakei subsp. sakei 23K

47.486

100

0.475