Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG892_RS07755 Genome accession   NZ_CP108002
Coordinates   1749817..1750461 (-) Length   214 a.a.
NCBI ID   WP_123469011.1    Uniprot ID   A0A561US71
Organism   Streptomyces sp. NBC_00341     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744817..1755461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG892_RS07725 (OG892_07735) - 1745092..1745859 (-) 768 WP_073739913.1 sulfite exporter TauE/SafE family protein -
  OG892_RS07730 (OG892_07740) - 1745922..1746860 (-) 939 WP_073739911.1 SPFH domain-containing protein -
  OG892_RS07735 (OG892_07745) - 1747017..1747448 (-) 432 WP_073739909.1 NfeD family protein -
  OG892_RS07740 (OG892_07750) - 1747547..1748344 (-) 798 WP_073739907.1 ABC transporter ATP-binding protein -
  OG892_RS07745 (OG892_07755) - 1748543..1749322 (+) 780 WP_073739905.1 hypothetical protein -
  OG892_RS07750 (OG892_07760) - 1749416..1749667 (-) 252 WP_073739903.1 chaplin -
  OG892_RS07755 (OG892_07765) vraR 1749817..1750461 (-) 645 WP_123469011.1 response regulator transcription factor Regulator
  OG892_RS07760 (OG892_07770) - 1750454..1751605 (-) 1152 WP_371628757.1 GAF domain-containing sensor histidine kinase -
  OG892_RS07765 (OG892_07775) - 1752035..1752775 (+) 741 WP_073739898.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23151.40 Da        Isoelectric Point: 5.1629

>NTDB_id=651144 OG892_RS07755 WP_123469011.1 1749817..1750461(-) (vraR) [Streptomyces sp. NBC_00341]
MADRIIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVYAGHVLLQPEVAGALLAQDDPGSGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=651144 OG892_RS07755 WP_123469011.1 1749817..1750461(-) (vraR) [Streptomyces sp. NBC_00341]
GTGGCTGACAGGATCATCAGGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGCGGTCTGCGTACGTTCCTGGAGAT
CCAGGACGACATAGAGGTCGTCGGCGAGGCCTCCGACGGTGCCGAGGGAGTGGCCAGGACCGAGGAGCTGCGCCCCGATG
TGGTGCTCATGGACATCAAGATGCCCGGCACCGACGGCATAGAGGCGCTGCGCAGGCTCCGGGAGCTGGAGAACCCTGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAACAGCGCACCGTCGTCCCCGCCCTGCGCGCCGGAGCCTCGGGGTACGTCTA
CAAGGACGTCGACCCGGACGCGCTGGCGGGCGCCATCCGCTCGGTGTACGCGGGCCATGTCCTGCTCCAGCCGGAAGTGG
CGGGAGCGCTCCTCGCCCAGGACGACCCGGGCAGCGGTACGGGCCGGGGAAGCACCCTCACCGAACGGGAGCGGGAAGTG
CTGGGCCTCATCGCCGACGGCCGCTCCAACCGGGAGATCGCGCGGGCGCTCGTCCTCTCGGAGAAGACCGTCAAGACGCA
CGTCTCGAACATTCTGATGAAGCTGGACCTCTCCGACCGCACCCAGGCCGCGCTCTGGGCGGTCCGGCACGGGGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A561US71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.66

96.262

0.43
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407