Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG892_RS04110 Genome accession   NZ_CP108002
Coordinates   928556..929206 (+) Length   216 a.a.
NCBI ID   WP_073736231.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00341     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 923556..934206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG892_RS04090 (OG892_04090) mug 924900..925541 (+) 642 WP_371628475.1 G/U mismatch-specific DNA glycosylase -
  OG892_RS04095 (OG892_04095) - 925595..926332 (-) 738 WP_371628476.1 ABC transporter permease -
  OG892_RS04100 (OG892_04100) - 926335..927270 (-) 936 WP_371628477.1 ABC transporter ATP-binding protein -
  OG892_RS04105 (OG892_04105) - 927379..928551 (+) 1173 WP_073736322.1 sensor histidine kinase -
  OG892_RS04110 (OG892_04110) vraR 928556..929206 (+) 651 WP_073736231.1 response regulator transcription factor Regulator
  OG892_RS04115 (OG892_04115) - 929438..930595 (+) 1158 WP_073736232.1 ROK family transcriptional regulator -
  OG892_RS04120 (OG892_04120) - 930649..931416 (-) 768 WP_073736233.1 GntR family transcriptional regulator -
  OG892_RS04125 (OG892_04125) - 931780..932664 (-) 885 WP_371628478.1 RNA polymerase sigma-70 factor -
  OG892_RS04130 (OG892_04130) - 932817..933647 (+) 831 WP_371628479.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23232.89 Da        Isoelectric Point: 4.7315

>NTDB_id=651139 OG892_RS04110 WP_073736231.1 928556..929206(+) (vraR) [Streptomyces sp. NBC_00341]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAGDGAAVIPLVRQLRPDVIAMDVRMPLMDGIEATRVVLRTVPDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPTEIVNAVRLVAEGESLLFPAAVRQLAAEYGTNRAREAMDQASLTEREAAV
LRLMARGLSNAEIAERLVVGVQTVKTHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=651139 OG892_RS04110 WP_073736231.1 928556..929206(+) (vraR) [Streptomyces sp. NBC_00341]
ATGCCGGTTACCGTTCTTCTCGTCGATGACGAACCCCTGGTCCGCGCGGGTCTGCGCGCGGTCCTGGAGGCCCAGCCCGA
TATCGAGGTCGTCGGTGAGGCGGGGGACGGAGCCGCGGTGATCCCCCTGGTCCGTCAGCTGCGGCCCGATGTCATCGCGA
TGGACGTCCGGATGCCGCTGATGGACGGGATAGAGGCGACCAGAGTGGTGCTGCGCACGGTGCCCGATCCGCCGAAGATC
CTGGTGGTGACGACGTTCGAGAATGACGAGTACGTCTATGAGGCACTGCGTGCGGGGGCGGACGGTTTCCTCCTGAAGCG
GGCCCGGCCCACCGAGATCGTGAACGCCGTGCGGCTGGTGGCGGAGGGCGAGTCCCTGTTGTTCCCGGCGGCGGTCCGGC
AACTGGCCGCCGAGTACGGGACGAACAGGGCGCGCGAGGCCATGGACCAGGCTTCGCTCACCGAGCGCGAGGCCGCTGTG
CTGCGGCTGATGGCCCGGGGCCTGTCCAACGCGGAGATCGCGGAGAGGCTCGTGGTGGGTGTGCAGACGGTGAAGACACA
TGTCAGCGCCGTATTGGCGAAGTTGGGTGCCCGCGACCGCACGCAGGCCGTCATCGCCGCCTATGAGTCCGGATTCGTCG
CACCCAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.056

99.074

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.37