Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG892_RS02755 Genome accession   NZ_CP108002
Coordinates   598654..599319 (-) Length   221 a.a.
NCBI ID   WP_371628361.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00341     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 593654..604319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG892_RS02730 (OG892_02735) - 594446..595660 (-) 1215 WP_073738100.1 ROK family protein -
  OG892_RS02735 (OG892_02740) - 595783..597012 (+) 1230 WP_073738101.1 MFS transporter -
  OG892_RS02740 (OG892_02745) - 597080..597460 (+) 381 WP_073738102.1 SCO4225 family membrane protein -
  OG892_RS02745 (OG892_02750) - 597481..598242 (+) 762 WP_371628359.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG892_RS02750 (OG892_02755) - 598331..598693 (+) 363 WP_371628360.1 DUF6332 family protein -
  OG892_RS02755 (OG892_02760) vraR 598654..599319 (-) 666 WP_371628361.1 response regulator Regulator
  OG892_RS02760 (OG892_02765) - 599316..600668 (-) 1353 WP_371628362.1 sensor histidine kinase -
  OG892_RS02765 (OG892_02770) - 600851..601618 (-) 768 WP_371628363.1 TetR/AcrR family transcriptional regulator -
  OG892_RS02770 (OG892_02775) - 601746..602198 (+) 453 WP_073738132.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OG892_RS02775 (OG892_02780) - 602245..603462 (-) 1218 WP_079193607.1 geranylgeranyl reductase family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23937.75 Da        Isoelectric Point: 4.7044

>NTDB_id=651136 OG892_RS02755 WP_371628361.1 598654..599319(-) (vraR) [Streptomyces sp. NBC_00341]
MIRVLLADDQLLVRAGFRALLDAQPDIEVAGEAADGEEAVLLVRELRPDTVLMDIRMPRLDGLAATRAITGDPALNEVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVAGDALLSPGVTRRLIAEFAARSKEPVAATGLSELTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=651136 OG892_RS02755 WP_371628361.1 598654..599319(-) (vraR) [Streptomyces sp. NBC_00341]
GTGATCCGCGTACTGCTCGCCGATGACCAGCTGCTGGTCCGGGCGGGATTCCGGGCCCTCCTGGACGCCCAGCCGGACAT
CGAGGTGGCGGGCGAGGCGGCCGACGGCGAGGAGGCCGTCCTGCTGGTGCGCGAACTGCGGCCGGACACCGTACTGATGG
ACATCCGGATGCCGCGTCTCGACGGCCTCGCCGCGACCCGCGCCATCACCGGGGACCCCGCGCTGAACGAGGTGAAGGTG
GTCATGCTCACCACCTTCGAGCTCGACGAGTACGTCTTCGAGGCGATCCGCTCCGGAGCATCCGGTTTCCTGGTGAAGGA
CACCGAGCCGGAAGAGCTGCTGCGGGCCGTCCGGGCGGTCGTCGCCGGTGACGCGCTGCTGTCCCCGGGCGTCACCCGCC
GGCTGATCGCGGAGTTCGCGGCCCGTTCCAAGGAACCCGTGGCGGCTACGGGCCTGAGCGAACTGACCGAACGGGAACGG
GAGGTGATGGCTCTGGTCGGCATAGGGCTCTCCAACGAGGAGATCGCCCGCAGGCTCGTCGTCAGCCCGCTCACGGCCAA
GACCCACGTGAGCCGGACCATGGTGAAGCTCGGCGCCCGCGACCGGGCCCAACTGGTGGTGCTCGCCTACGAGTCGGGCC
TCGTACGCCCCGGCTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.14

97.285

0.371
  degU Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.362