Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA41_RS20330 Genome accession   NZ_CP107999
Coordinates   4586934..4587533 (+) Length   199 a.a.
NCBI ID   WP_024492454.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00342     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4581934..4592533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA41_RS20305 (OHA41_20310) - 4582179..4583552 (+) 1374 WP_327337712.1 aspartate aminotransferase family protein -
  OHA41_RS20310 (OHA41_20315) - 4583657..4584430 (+) 774 WP_327337711.1 GntR family transcriptional regulator -
  OHA41_RS20315 (OHA41_20320) - 4584551..4585201 (+) 651 WP_073733540.1 hypothetical protein -
  OHA41_RS20320 (OHA41_20325) - 4585324..4586109 (-) 786 WP_327337710.1 SLATT domain-containing protein -
  OHA41_RS20325 (OHA41_20330) - 4586480..4586815 (+) 336 WP_327340632.1 YbaB/EbfC family nucleoid-associated protein -
  OHA41_RS20330 (OHA41_20335) recR 4586934..4587533 (+) 600 WP_024492454.1 recombination mediator RecR Machinery gene
  OHA41_RS20335 (OHA41_20340) - 4587659..4588318 (+) 660 WP_024492455.1 DUF5063 domain-containing protein -
  OHA41_RS20340 (OHA41_20345) - 4588387..4589004 (+) 618 WP_328696434.1 hypothetical protein -
  OHA41_RS20345 (OHA41_20350) - 4589075..4589254 (+) 180 WP_073733543.1 CopG family transcriptional regulator -
  OHA41_RS20350 (OHA41_20355) - 4589256..4589603 (+) 348 WP_073733544.1 glyoxalase -
  OHA41_RS20355 (OHA41_20360) - 4589653..4591095 (+) 1443 WP_328696435.1 MFS transporter -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21868.24 Da        Isoelectric Point: 5.1558

>NTDB_id=651098 OHA41_RS20330 WP_024492454.1 4586934..4587533(+) (recR) [Streptomyces sp. NBC_00342]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAICGNVAQQEQCGICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=651098 OHA41_RS20330 WP_024492454.1 4586934..4587533(+) (recR) [Streptomyces sp. NBC_00342]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAGCCCACGGACGTGCGCCGGCTGGCCCACGCCCTCCTTGAGGTCAAGGACAAGGTCC
GCTTCTGCGCGATCTGCGGCAACGTCGCGCAGCAGGAGCAGTGCGGGATCTGCCGCGACCCGCGCCGCGACCTGACGGTC
ATCTGCGTCGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGGGAGTTCCGGGGCCGATACCACGTACTCGG
CGGGGCGATCAGCCCCATCGAGGGCGTGGGTCCGGACGATCTGCGCATCCGCGAGCTGCTGGCCCGGCTGGCCGACGGCT
CCATCACCGAGCTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGATCAAG
CCGATGGGCCTGCGGGTCACCCGGCTGGCCAGCGGTCTTCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGGCGTCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.155

97.487

0.538
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462