Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA41_RS20220 Genome accession   NZ_CP107999
Coordinates   4563120..4563797 (+) Length   225 a.a.
NCBI ID   WP_327337724.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00342     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4558120..4568797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA41_RS20200 (OHA41_20205) kynU 4558734..4559921 (+) 1188 WP_328696425.1 kynureninase -
  OHA41_RS20205 (OHA41_20210) - 4560015..4560686 (+) 672 WP_327337727.1 SUKH-4 family immunity protein -
  OHA41_RS20210 (OHA41_20215) - 4560814..4561689 (+) 876 WP_327337726.1 alpha/beta hydrolase -
  OHA41_RS20215 (OHA41_20220) - 4561822..4563123 (+) 1302 WP_328696426.1 histidine kinase -
  OHA41_RS20220 (OHA41_20225) vraR 4563120..4563797 (+) 678 WP_327337724.1 response regulator transcription factor Regulator
  OHA41_RS20225 (OHA41_20230) - 4563930..4565165 (+) 1236 WP_073733520.1 cytochrome P450 -
  OHA41_RS20230 (OHA41_20235) - 4565212..4566843 (-) 1632 WP_328696427.1 ABC transporter permease -
  OHA41_RS20235 (OHA41_20240) - 4566840..4567793 (-) 954 WP_327337722.1 ABC transporter ATP-binding protein -
  OHA41_RS20240 (OHA41_20245) - 4567916..4568473 (+) 558 WP_328696428.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24252.09 Da        Isoelectric Point: 4.8357

>NTDB_id=651097 OHA41_RS20220 WP_327337724.1 4563120..4563797(+) (vraR) [Streptomyces sp. NBC_00342]
MTTTPEPVIRVLIVDDQMMVREGFSVLLNAMPGIEVVGEAVNGREAVSQVAALRPDVVLMDIRMPELNGIEATREIVAAD
RDAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTKRLINEFSKLADAPRPPALARIG
DLTERETEVLVLIAQGLSNGEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPS

Nucleotide


Download         Length: 678 bp        

>NTDB_id=651097 OHA41_RS20220 WP_327337724.1 4563120..4563797(+) (vraR) [Streptomyces sp. NBC_00342]
ATGACGACCACCCCGGAACCCGTGATCCGGGTCCTGATCGTCGACGACCAGATGATGGTCCGCGAGGGGTTCTCCGTGCT
GCTCAACGCGATGCCGGGCATCGAGGTCGTGGGCGAGGCGGTCAACGGCCGCGAGGCGGTCTCGCAGGTCGCCGCGCTCC
GCCCCGACGTGGTGCTGATGGACATCCGGATGCCGGAGCTGAACGGGATCGAGGCGACCCGCGAGATCGTCGCCGCCGAC
CGGGACGCCAAAGTGCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTCTACCAGGCGCTGCGCGCCGGCGCGTCCGG
CTTCCTCCTCAAGGACGCCTCGGCCCGGCAGCTCGCGGACGGCGTACGGGTGGTGGCCTCCGGCGAGGCGCTGCTCGCCC
CCACCGTCACCAAGCGGCTGATCAACGAGTTCTCCAAGCTCGCGGACGCCCCGCGCCCGCCCGCACTCGCCCGGATCGGT
GACCTCACCGAGCGCGAGACGGAGGTGCTGGTCCTCATCGCCCAGGGCCTGTCGAACGGGGAGATCGCCTCGCACCTGGT
GGTCGCGGAGTCCACCATCAAGACCCATGTGAGCCGCATCCTGGTCAAGCTGGGCCTGCGCGACCGCACCCAGGCGGCCG
TCTTCGCCTATGAGGCCCGGCTGGTCACGCCGTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-216)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.393

95.111

0.422
  degU Bacillus subtilis subsp. subtilis str. 168

43.318

96.444

0.418