Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA41_RS16300 Genome accession   NZ_CP107999
Coordinates   3696727..3697377 (+) Length   216 a.a.
NCBI ID   WP_328696074.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00342     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3691727..3702377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA41_RS16280 (OHA41_16270) - 3692863..3693993 (-) 1131 WP_328696072.1 YncE family protein -
  OHA41_RS16285 (OHA41_16275) - 3694026..3694622 (-) 597 WP_327338270.1 ankyrin repeat domain-containing protein -
  OHA41_RS16290 (OHA41_16280) - 3694647..3695202 (-) 556 Protein_3236 heme-binding protein -
  OHA41_RS16295 (OHA41_16285) - 3695445..3696692 (+) 1248 WP_328696073.1 sensor histidine kinase -
  OHA41_RS16300 (OHA41_16290) vraR 3696727..3697377 (+) 651 WP_328696074.1 response regulator transcription factor Regulator
  OHA41_RS16305 (OHA41_16295) - 3697462..3697827 (-) 366 WP_327338266.1 hypothetical protein -
  OHA41_RS16310 (OHA41_16300) - 3697842..3699095 (-) 1254 WP_327338265.1 helix-turn-helix transcriptional regulator -
  OHA41_RS16315 (OHA41_16305) - 3699276..3699587 (+) 312 WP_327338264.1 hypothetical protein -
  OHA41_RS16320 (OHA41_16310) - 3699610..3700440 (-) 831 WP_328696075.1 hypothetical protein -
  OHA41_RS16325 (OHA41_16315) - 3700991..3701563 (-) 573 WP_073732999.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22958.38 Da        Isoelectric Point: 5.7118

>NTDB_id=651090 OHA41_RS16300 WP_328696074.1 3696727..3697377(+) (vraR) [Streptomyces sp. NBC_00342]
MSTAHPPAPVPVRILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVALATRLTPDVVLMDLQLGEGIDGVEATRRI
VAGTESAHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFTAIRSAAQGRTTLSPPVASRVMARMRKPLPTLTDRER
DILGQLSRGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 651 bp        

>NTDB_id=651090 OHA41_RS16300 WP_328696074.1 3696727..3697377(+) (vraR) [Streptomyces sp. NBC_00342]
ATGAGCACCGCGCACCCGCCCGCCCCCGTGCCCGTCCGCATCCTGCTCTGCGACGACCACGCCGTCGTACGCGCCGGGCT
CCTCGCCCTCCTGGGCAGCGAGCCCGACATCGAGGTCGTGGGCGAGGCCGGCAGCGGCGAGGAGGCCGTCGCCCTGGCCA
CCAGGCTCACCCCCGACGTCGTCCTGATGGACCTCCAACTGGGCGAGGGCATCGACGGCGTCGAGGCGACCCGCCGGATC
GTGGCGGGCACGGAAAGCGCCCACGTCCTGGTCCTCACCACGTACGACACGGACGCCGACATCACCCGCGCCATCGAGGC
CGGCGCCACCGGCTACCTGCTGAAGGCCGAGCGCCCGGAGGAGCTCTTCACCGCGATCCGCTCCGCCGCCCAGGGCCGCA
CCACGCTCTCGCCGCCCGTCGCCAGCCGCGTCATGGCCCGCATGCGCAAGCCGCTGCCCACCCTCACAGACCGCGAACGC
GACATCCTCGGCCAGCTCTCCCGGGGTTTGGGCAACCGCGACATCGCCCGCGCCCTGTTCATCAGCGAGGCCACCGTCAA
GACCCACCTGGGCCGCATCTACGACAAGCTCGGTGTCGACACCCGCGCCGGAGCGGTAGCCGTGGCGAAGGAGCAACGGC
TGCTGCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(14-127)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.524

97.222

0.384
  degU Bacillus subtilis subsp. subtilis str. 168

36.239

100

0.366