Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LZ558_RS02605 Genome accession   NZ_CP091424
Coordinates   588153..589502 (-) Length   449 a.a.
NCBI ID   WP_268119287.1    Uniprot ID   -
Organism   Methylobacter sp. YRD-M1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 583153..594502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ558_RS02580 (LZ558_02565) - 583189..583710 (+) 522 WP_268119282.1 UPF0149 family protein -
  LZ558_RS02585 (LZ558_02570) pepP 583727..585037 (+) 1311 WP_268119283.1 Xaa-Pro aminopeptidase -
  LZ558_RS02590 (LZ558_02575) ubiH 585037..586248 (+) 1212 WP_268119284.1 2-octaprenyl-6-methoxyphenyl hydroxylase -
  LZ558_RS02595 (LZ558_02580) - 586251..587486 (+) 1236 WP_268119285.1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase -
  LZ558_RS02600 (LZ558_02585) - 587651..588115 (+) 465 WP_268119286.1 hypothetical protein -
  LZ558_RS02605 (LZ558_02590) pilR 588153..589502 (-) 1350 WP_268119287.1 sigma-54 dependent transcriptional regulator Regulator
  LZ558_RS02610 (LZ558_02595) - 589499..591127 (-) 1629 WP_268119288.1 HAMP domain-containing sensor histidine kinase -
  LZ558_RS02615 (LZ558_02600) sucC 591284..592450 (+) 1167 WP_268119289.1 ADP-forming succinate--CoA ligase subunit beta -
  LZ558_RS02620 (LZ558_02605) sucD 592447..593316 (+) 870 WP_268119290.1 succinate--CoA ligase subunit alpha -
  LZ558_RS02625 (LZ558_02610) - 593361..594158 (+) 798 WP_268119291.1 ceramidase domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49869.43 Da        Isoelectric Point: 6.9695

>NTDB_id=651082 LZ558_RS02605 WP_268119287.1 588153..589502(-) (pilR) [Methylobacter sp. YRD-M1]
MKKPLTLIVDDEPDIRELLEITLNRMDIQTHCAENIGKAKTLLQQHSFDLCLTDMKLPDGNGLDLLDHIHLNCAPMPVAV
ITAHGDMDTAIQAMKKGSFDFVSKPVDLSALRQMVSSALKLANATTYPAKDRRTRHLLLGESPVMRGIRSKITKLALSQA
PVYISGESGSGKELVARLIHQQSSRSDKPFVAINCGAIPHELMESEFFGHKKGSFTGAISDKKGLFQAAEGGTLFLDEIA
ELPQSLQVKLLRAIQEKRIRPVGEHQEIPVDVRLLSATYRNLADMVQAGTFRQDLYYRINVIDLYVPPLRERTIDIPILT
DHILTKLTQASSLNKPTVSASALSALQQYHFPGNVRELENILERALALYDGKSIEIDDLNLPVGAHAIADSPAYDPAQGS
LEDYLEQIERKAIVIALEENKWNKTAAAKQLGLSFRSLRYRLKKLDLDN

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=651082 LZ558_RS02605 WP_268119287.1 588153..589502(-) (pilR) [Methylobacter sp. YRD-M1]
ATGAAAAAACCACTGACATTAATTGTCGATGATGAACCCGATATCCGTGAATTACTGGAAATAACCCTTAACCGCATGGA
TATCCAGACGCATTGCGCCGAAAATATCGGCAAAGCAAAAACCCTGCTGCAACAGCATTCATTCGATCTTTGCCTGACCG
ATATGAAGCTGCCGGACGGCAATGGCCTTGATCTGCTGGATCATATACACTTGAATTGCGCCCCGATGCCGGTTGCCGTT
ATTACCGCACATGGCGATATGGATACGGCGATCCAGGCCATGAAAAAAGGCTCTTTTGATTTTGTCTCGAAACCGGTCGA
TTTATCTGCTCTCAGGCAAATGGTGAGCAGTGCGCTGAAACTTGCCAACGCGACGACATACCCGGCCAAAGACAGGAGAA
CCCGGCATCTATTGCTGGGCGAATCGCCGGTCATGCGAGGCATCCGCAGCAAAATAACCAAACTGGCGCTTAGCCAGGCT
CCGGTTTATATCAGCGGCGAATCCGGCTCGGGCAAAGAACTGGTCGCCCGGCTCATCCATCAACAGAGTTCGCGCAGCGA
CAAGCCTTTTGTGGCCATAAACTGCGGCGCTATTCCTCATGAGTTGATGGAAAGCGAATTCTTCGGCCATAAAAAAGGTA
GTTTTACCGGTGCGATCAGTGATAAGAAAGGCCTGTTCCAGGCGGCTGAAGGCGGTACTTTATTTCTCGATGAAATCGCG
GAACTGCCTCAATCCCTGCAGGTAAAACTGCTGCGCGCCATTCAGGAAAAAAGAATACGCCCTGTCGGCGAACATCAGGA
AATCCCCGTCGACGTCCGCCTGCTCAGCGCCACCTACCGCAACTTGGCCGATATGGTCCAGGCCGGCACGTTCAGGCAGG
ATTTGTACTACCGCATCAACGTCATCGACCTGTATGTGCCGCCTTTGCGGGAGCGCACCATAGACATACCCATTCTCACC
GACCACATACTGACAAAGCTCACGCAAGCCAGCAGCCTGAACAAACCGACCGTGTCGGCTTCGGCCCTGTCGGCACTGCA
GCAATATCATTTTCCCGGCAATGTGCGTGAGCTTGAGAACATTCTGGAACGGGCTCTGGCCTTGTATGACGGCAAAAGCA
TCGAAATCGACGACCTGAACCTGCCGGTAGGCGCGCATGCCATCGCCGACTCGCCGGCCTATGACCCGGCTCAGGGATCG
CTGGAAGATTATCTGGAGCAGATCGAACGAAAGGCGATCGTCATCGCCCTGGAAGAAAACAAATGGAACAAGACGGCCGC
CGCCAAACAGCTGGGGCTGTCTTTTCGATCCTTACGCTATCGTTTGAAGAAACTGGATCTGGATAATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(138-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.111

100

0.612
  pilR Acinetobacter baumannii strain A118

50.749

100

0.528