Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA41_RS08085 Genome accession   NZ_CP107999
Coordinates   1909788..1910465 (-) Length   225 a.a.
NCBI ID   WP_327339366.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00342     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1904788..1915465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA41_RS08065 (OHA41_08070) - 1904799..1906169 (+) 1371 WP_328695407.1 citrate synthase -
  OHA41_RS08070 (OHA41_08075) - 1906199..1907218 (-) 1020 WP_328695408.1 LacI family DNA-binding transcriptional regulator -
  OHA41_RS08075 (OHA41_08080) - 1907624..1909216 (-) 1593 WP_327339367.1 cation acetate symporter -
  OHA41_RS08080 (OHA41_08085) - 1909213..1909656 (-) 444 WP_328698103.1 DUF485 domain-containing protein -
  OHA41_RS08085 (OHA41_08090) vraR 1909788..1910465 (-) 678 WP_327339366.1 response regulator transcription factor Regulator
  OHA41_RS08090 (OHA41_08095) - 1910462..1911625 (-) 1164 WP_327339365.1 histidine kinase -
  OHA41_RS08095 (OHA41_08100) - 1911622..1912140 (-) 519 WP_328695409.1 DUF1453 domain-containing protein -
  OHA41_RS08100 (OHA41_08105) - 1912325..1914445 (-) 2121 WP_073737702.1 DNA topoisomerase IV subunit B -
  OHA41_RS08105 (OHA41_08110) - 1914885..1915118 (+) 234 WP_024489001.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 23852.40 Da        Isoelectric Point: 5.1365

>NTDB_id=651069 OHA41_RS08085 WP_327339366.1 1909788..1910465(-) (vraR) [Streptomyces sp. NBC_00342]
MTARVVVADDQSVVREGIVMLLGLLPGIEVVGSAKDGEEAVALVAERAPDVVLMDLRMPRCDGVEATRRIRKNHPATQVV
VLTTFAEDDSLFPALRAGARGYLTKDAGGDEIVRAIEAVLSGEVGLSPAVQRRLLEQVTTGPLPPAAGAEPELPDGMTPR
EAEVLVLIADGLSNAEIARSLRISQATVKSHINNLFAKAGLRDRAQAVRYAYVRGLAQPPGTSFT

Nucleotide


Download         Length: 678 bp        

>NTDB_id=651069 OHA41_RS08085 WP_327339366.1 1909788..1910465(-) (vraR) [Streptomyces sp. NBC_00342]
GTGACCGCGCGGGTGGTGGTGGCGGACGACCAGTCGGTGGTGCGCGAGGGAATCGTCATGCTGCTGGGCCTGCTGCCCGG
GATCGAGGTGGTCGGATCGGCGAAGGACGGGGAGGAGGCCGTCGCCCTGGTGGCCGAGCGCGCCCCGGACGTGGTCCTGA
TGGACCTGCGCATGCCCCGCTGCGACGGTGTGGAGGCGACGCGCCGGATCCGCAAGAACCATCCCGCCACCCAGGTCGTC
GTGCTCACGACCTTCGCCGAGGACGATTCACTCTTCCCGGCACTCCGGGCGGGGGCCCGCGGCTACCTCACCAAGGACGC
GGGGGGAGACGAGATCGTGCGGGCCATCGAGGCGGTGCTCTCGGGCGAGGTCGGGCTCTCGCCCGCCGTGCAGCGCCGGC
TGCTGGAGCAGGTCACCACGGGGCCGTTGCCGCCGGCCGCGGGTGCTGAGCCGGAGCTGCCCGACGGGATGACCCCGCGC
GAGGCGGAGGTGCTCGTCCTGATCGCCGACGGGCTGTCCAACGCGGAGATCGCGCGCAGTCTGCGCATCTCGCAGGCCAC
CGTGAAGAGCCACATCAACAACCTGTTCGCCAAGGCGGGGCTCCGTGACCGCGCCCAGGCGGTCCGCTACGCGTACGTTC
GGGGGCTCGCACAGCCGCCCGGCACATCCTTCACCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.45

96.889

0.382
  degU Bacillus subtilis subsp. subtilis str. 168

37.22

99.111

0.369