Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA41_RS05505 Genome accession   NZ_CP107999
Coordinates   1309806..1310438 (+) Length   210 a.a.
NCBI ID   WP_327339755.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00342     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304806..1315438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA41_RS05485 (OHA41_05490) - 1305832..1306632 (+) 801 WP_328695167.1 IclR family transcriptional regulator -
  OHA41_RS05490 (OHA41_05495) - 1306683..1307363 (-) 681 WP_327339758.1 ABC transporter ATP-binding protein -
  OHA41_RS05495 (OHA41_05500) - 1307360..1308442 (-) 1083 WP_328695168.1 ABC transporter permease -
  OHA41_RS05500 (OHA41_05505) - 1308553..1309809 (+) 1257 WP_328695169.1 sensor histidine kinase -
  OHA41_RS05505 (OHA41_05510) vraR 1309806..1310438 (+) 633 WP_327339755.1 response regulator transcription factor Regulator
  OHA41_RS05510 (OHA41_05515) - 1310514..1310816 (-) 303 WP_199884385.1 DUF5955 family protein -
  OHA41_RS05515 (OHA41_05520) - 1311035..1311658 (+) 624 WP_327339754.1 nucleotidyltransferase family protein -
  OHA41_RS05520 (OHA41_05525) aceB 1311893..1313512 (+) 1620 WP_073735080.1 malate synthase A -
  OHA41_RS05525 (OHA41_05530) - 1313732..1314850 (-) 1119 WP_327339753.1 hypothetical protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22128.56 Da        Isoelectric Point: 6.4972

>NTDB_id=651066 OHA41_RS05505 WP_327339755.1 1309806..1310438(+) (vraR) [Streptomyces sp. NBC_00342]
MTMPIRLLLADDHPVVRAGLRAVLDTEPDFHVAAEAATAEQAVALAATGEFDVVLMDLQFGPGLHGSEATAAITSVPDAP
RVLILTTYDTDADILAAVEAGAAGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAEALTKRELEVLQLVG
EGLSNLRISKKLFLSQATVKSHLVHIYAKLGVDSRTAAVAAATARRLIRR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=651066 OHA41_RS05505 WP_327339755.1 1309806..1310438(+) (vraR) [Streptomyces sp. NBC_00342]
ATGACCATGCCGATCAGGCTGCTGCTCGCCGACGACCACCCGGTGGTCCGGGCGGGGCTGCGGGCCGTTCTGGACACCGA
GCCGGACTTCCACGTCGCCGCCGAGGCCGCCACCGCGGAGCAGGCCGTGGCCCTGGCCGCGACCGGCGAGTTCGACGTCG
TCCTGATGGACCTGCAGTTCGGCCCCGGTCTGCACGGCTCGGAGGCCACCGCCGCGATCACCTCGGTGCCGGACGCGCCC
CGGGTGCTGATCCTGACCACCTACGACACGGACGCCGACATCCTGGCCGCGGTCGAGGCGGGGGCCGCCGGCTATCTGCT
GAAGGACGCCCCGCCGGAGGAGCTGGCCGCCGCGGTCCGTACGGCGGCGGCCGGCCGGTCCGCACTCGCCCCGGCCGTCG
CGCACCGGCTGATGGACCGGATGAGGACCCCCGCGGAGGCCCTCACCAAGCGCGAGCTGGAGGTCCTGCAACTGGTGGGC
GAGGGGCTGTCCAACCTGCGGATCAGCAAGAAGCTGTTCCTGAGCCAGGCGACCGTGAAGTCCCATCTGGTGCACATCTA
CGCCAAGCTGGGCGTCGACTCACGCACGGCGGCGGTCGCGGCGGCGACGGCCCGCAGGCTCATCCGCCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(147-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.667

100

0.367
  degU Bacillus subtilis subsp. subtilis str. 168

34.862

100

0.362